View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18017_high_9 (Length: 332)

Name: NF18017_high_9
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18017_high_9
NF18017_high_9
[»] chr6 (4 HSPs)
chr6 (88-318)||(7561044-7561274)
chr6 (226-301)||(31122581-31122656)
chr6 (15-51)||(7561341-7561377)
chr6 (246-304)||(11409786-11409843)
[»] chr4 (3 HSPs)
chr4 (227-297)||(14701060-14701130)
chr4 (246-304)||(13978303-13978360)
chr4 (247-304)||(19928074-19928130)
[»] chr3 (2 HSPs)
chr3 (226-295)||(20537452-20537520)
chr3 (232-304)||(18882311-18882382)
[»] chr1 (3 HSPs)
chr1 (246-304)||(50197807-50197864)
chr1 (246-304)||(49715392-49715449)
chr1 (246-304)||(49718871-49718928)
[»] scaffold0382 (1 HSPs)
scaffold0382 (232-304)||(16307-16378)
[»] scaffold0214 (2 HSPs)
scaffold0214 (232-304)||(12705-12776)
scaffold0214 (232-304)||(26721-26792)
[»] scaffold0062 (2 HSPs)
scaffold0062 (246-286)||(53880-53920)
scaffold0062 (248-281)||(69660-69693)
[»] chr8 (7 HSPs)
chr8 (246-286)||(18696924-18696964)
chr8 (247-301)||(452223-452277)
chr8 (238-304)||(14187069-14187134)
chr8 (227-297)||(24904377-24904447)
chr8 (227-281)||(27864461-27864515)
chr8 (227-280)||(24434190-24434243)
chr8 (227-280)||(24444236-24444289)
[»] chr2 (4 HSPs)
chr2 (232-304)||(4576948-4577019)
chr2 (246-286)||(15704968-15705008)
chr2 (246-304)||(29434807-29434864)
chr2 (248-281)||(15721103-15721136)
[»] scaffold0911 (1 HSPs)
scaffold0911 (246-304)||(3734-3791)
[»] scaffold0175 (1 HSPs)
scaffold0175 (227-297)||(29552-29622)
[»] scaffold0012 (1 HSPs)
scaffold0012 (227-297)||(31958-32028)
[»] chr7 (2 HSPs)
chr7 (227-293)||(710915-710981)
chr7 (246-304)||(23468032-23468089)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 88 - 318
Target Start/End: Complemental strand, 7561274 - 7561044
Alignment:
Q  88 gagagggtagagttggatagaaagttgaacacgtattttaggaatttatgaacctttttaggttgaaaatgtatggaccactttttggaatatatgaatg 187  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7561274 gagagggtcgagttggatagaaagttgaacatgtattttaggaatttatgaacctttttaggttgaaaatgtatggaccactttttggaatatatgaatg 7561175  T
Q  188 tatttgggaccaggccaagactcaatcatttttatggcattttggttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatga 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7561174 tatttgggaccaggccaagactcaatcatttttatggcattttggttaagtttatgtcatttttatggcatatagagagtcaattacttgtaaaacatga 7561075  T
Q  288 ttaaatcagatcaagatggaacaagggcaca 318  Q
    |||||||||||||||||||||||||||||||    
T  7561074 ttaaatcagatcaagatggaacaagggcaca 7561044  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 31122581 - 31122656
Alignment:
Q  226 attttggttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaa 301  Q
    |||||||| ||||||||||| |||||||||||| ||||||||||| | |||||||| |||| | |||||| |||||    
T  31122581 attttggtcatgtttatgtcgtttttatggcatttagagagtcaactgcttgtaattcatggtaaaatcatatcaa 31122656  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 7561377 - 7561341
Alignment:
Q  15 ttgatgatgaggagtctgcaaatattgataaaatggg 51  Q
    ||||| |||||||||||||||||||||||||||||||    
T  7561377 ttgataatgaggagtctgcaaatattgataaaatggg 7561341  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 11409786 - 11409843
Alignment:
Q  246 atttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||||||||||| ||||||||||||| ||||| ||||||| ||||||||  |||||||    
T  11409786 atttttatggcatttagagagtcaattgcttgt-atacatggttaaatcatctcaagat 11409843  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 14701060 - 14701130
Alignment:
Q  227 ttttggttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaatcaga 297  Q
    |||| ||||||||||||||||||||||| ||| ||||||| ||| |||||||||  |||| ||||||||||    
T  14701060 ttttagttatgtttatgtcatttttatgacatctagagagacaactacttgtaaatcatggttaaatcaga 14701130  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 13978303 - 13978360
Alignment:
Q  246 atttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||||||  |||||||    
T  13978303 atttttatggcatttagagagtcaattgcttgt-atacatgattaaatcatctcaagat 13978360  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 19928074 - 19928130
Alignment:
Q  247 tttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    |||||||||||  ||||||||||||| ||||| ||||||||||||||||  |||||||    
T  19928074 tttttatggcacttagagagtcaattgcttgt-atacatgattaaatcatctcaagat 19928130  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 20537520 - 20537452
Alignment:
Q  226 attttggttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaatca 295  Q
    |||||||| || |||||||| |||| |||||||| ||||||||||||||||||||| |||| ||||||||    
T  20537520 attttggtcatttttatgtcgtttt-atggcatacagagagtcaattacttgtaatccatggttaaatca 20537452  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 18882311 - 18882382
Alignment:
Q  232 gttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||| ||||||  ||||||||||||| ||||||||||||| ||||| ||||||| ||||||||  |||||||    
T  18882311 gttatttttatgatatttttatggcatttagagagtcaattgcttgt-atacatggttaaatcatctcaagat 18882382  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 50197864 - 50197807
Alignment:
Q  246 atttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||||||  |||||||    
T  50197864 atttttatggcatttagagagtcaattgcttgt-atacatgattaaatcatctcaagat 50197807  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 49715392 - 49715449
Alignment:
Q  246 atttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||||||||||| ||||||||||||| ||||| ||||||| ||||||||  |||||||    
T  49715392 atttttatggcatttagagagtcaattgcttgt-atacatggttaaatcatctcaagat 49715449  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 49718871 - 49718928
Alignment:
Q  246 atttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||||||||||| ||||||||||||| ||||| ||||||| ||||||||  |||||||    
T  49718871 atttttatggcatttagagagtcaattgcttgt-atacatggttaaatcatctcaagat 49718928  T

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Target: scaffold0382 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0382
Description:

Target: scaffold0382; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 16307 - 16378
Alignment:
Q  232 gttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||| ||||||  ||||||||||||| ||||||||||||| ||||| ||||||| ||||||||  |||||||    
T  16307 gttatttttatgatatttttatggcatttagagagtcaattgcttgt-atacatggttaaatcatctcaagat 16378  T

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Target: scaffold0214 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 12705 - 12776
Alignment:
Q  232 gttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||| ||||||  ||||||||||||| ||||||||||||| ||||| ||||||| ||||||||  |||||||    
T  12705 gttatttttatgatatttttatggcatttagagagtcaattgcttgt-atacatggttaaatcatctcaagat 12776  T

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Target: scaffold0214; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 26721 - 26792
Alignment:
Q  232 gttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||| ||||||  ||||||||||||| ||||||||||||| ||||| ||||||| ||||||||  |||||||    
T  26721 gttatttttatgatatttttatggcatttagagagtcaattgcttgt-atacatggttaaatcatctcaagat 26792  T

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Target: scaffold0062 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 53920 - 53880
Alignment:
Q  246 atttttatggcatatagagagtcaattacttgtaatacatg 286  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  53920 atttttatggcatttagagagtcaattacttgtaattcatg 53880  T

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Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 69693 - 69660
Alignment:
Q  248 ttttatggcatatagagagtcaattacttgtaat 281  Q
    ||||||||||| ||||||||||||||||||||||    
T  69693 ttttatggcatttagagagtcaattacttgtaat 69660  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 18696964 - 18696924
Alignment:
Q  246 atttttatggcatatagagagtcaattacttgtaatacatg 286  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  18696964 atttttatggcatttagagagtcaattacttgtaattcatg 18696924  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 452223 - 452277
Alignment:
Q  247 tttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaa 301  Q
    |||||||||||| |||||||||| ||||||||||| |||| | | ||||||||||    
T  452223 tttttatggcatttagagagtcagttacttgtaattcatggtgagatcagatcaa 452277  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 14187069 - 14187134
Alignment:
Q  238 tttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||||| ||||| ||||||| ||||||||||||| ||||| ||||||| ||||||||  |||||||    
T  14187069 tttatgttattttaatggcatttagagagtcaattgcttgt-atacatggttaaatcatctcaagat 14187134  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 24904447 - 24904377
Alignment:
Q  227 ttttggttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaatcaga 297  Q
    |||| ||||||||||||||||||||||| ||| ||||||| ||| | |||||||  |||  ||||||||||    
T  24904447 ttttagttatgtttatgtcatttttatgacatctagagagacaactgcttgtaaatcattgttaaatcaga 24904377  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 27864515 - 27864461
Alignment:
Q  227 ttttggttatgtttatgtcatttttatggcatatagagagtcaattacttgtaat 281  Q
    |||| |||||||||||||| |||||||||||| ||||||| ||| | ||||||||    
T  27864515 ttttagttatgtttatgtcgtttttatggcatttagagagacaactgcttgtaat 27864461  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 24434190 - 24434243
Alignment:
Q  227 ttttggttatgtttatgtcatttttatggcatatagagagtcaattacttgtaa 280  Q
    |||| ||||||||||||||||||||| | |||  |||||||||| |||||||||    
T  24434190 ttttagttatgtttatgtcatttttaggacattaagagagtcaactacttgtaa 24434243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 24444236 - 24444289
Alignment:
Q  227 ttttggttatgtttatgtcatttttatggcatatagagagtcaattacttgtaa 280  Q
    |||| ||||||||||||||||||||| | |||  |||||||||| |||||||||    
T  24444236 ttttagttatgtttatgtcatttttaggacattaagagagtcaactacttgtaa 24444289  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 4576948 - 4577019
Alignment:
Q  232 gttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||| ||||||  ||||||||||||| ||||||||||||| ||||| ||||||| ||||||||  |||||||    
T  4576948 gttatttttatggtatttttatggcatttagagagtcaattgcttgt-atacatggttaaatcatctcaagat 4577019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 15705008 - 15704968
Alignment:
Q  246 atttttatggcatatagagagtcaattacttgtaatacatg 286  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  15705008 atttttatggcatttagagagtcaattacttgtaattcatg 15704968  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 29434807 - 29434864
Alignment:
Q  246 atttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||||||||||| ||||||||||||| ||||| ||||||| ||||||||  |||||||    
T  29434807 atttttatggcatttagagagtcaattgcttgt-atacatggttaaatcatctcaagat 29434864  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 15721136 - 15721103
Alignment:
Q  248 ttttatggcatatagagagtcaattacttgtaat 281  Q
    ||||||||||| ||||||||||||||||||||||    
T  15721136 ttttatggcatttagagagtcaattacttgtaat 15721103  T

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Target: scaffold0911 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 3734 - 3791
Alignment:
Q  246 atttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
    ||||||| ||||| ||||||||||||| ||||| ||||||||||||||||  |||||||    
T  3734 atttttacggcatttagagagtcaattgcttgt-atacatgattaaatcatctcaagat 3791  T

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Target: scaffold0175 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 29622 - 29552
Alignment:
Q  227 ttttggttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaatcaga 297  Q
    |||| ||||||||||||||||||||||| ||| |||||||  || | |||||||  |||| ||||||||||    
T  29622 ttttagttatgtttatgtcatttttatgacatttagagagataactgcttgtaaatcatggttaaatcaga 29552  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 32028 - 31958
Alignment:
Q  227 ttttggttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaatcaga 297  Q
    |||| |||||||||||||| |||||||| ||| ||||||| ||| | |||||||  |||| ||||||||||    
T  32028 ttttagttatgtttatgtcgtttttatgacatctagagagacaactgcttgtaaatcatggttaaatcaga 31958  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 710981 - 710915
Alignment:
Q  227 ttttggttatgtttatgtcatttttatggcatatagagagtcaattacttgtaatacatgattaaat 293  Q
    |||| |||||||||||||| |||||||| ||||||||||| ||| | |||||||  |||| ||||||    
T  710981 ttttagttatgtttatgtcgtttttatgacatatagagagacaactgcttgtaaatcatggttaaat 710915  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 23468089 - 23468032
Alignment:
Q  246 atttttatggcatatagagagtcaattacttgtaatacatgattaaatcagatcaagat 304  Q
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T  23468089 atttttatggcatttagagagtcaattgcttgt-atacatggttaaatcatctcaagat 23468032  T

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