View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18017_low_12 (Length: 298)
Name: NF18017_low_12
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18017_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 23853305 - 23853036
Alignment:
| Q |
10 |
acatcatcatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggttgtgtcacggttgtgt |
109 |
Q |
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| T |
23853305 |
acatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggttgtgtcacggttgtgt |
23853206 |
T |
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| Q |
110 |
tgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatat |
209 |
Q |
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| T |
23853205 |
tgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatat |
23853106 |
T |
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| Q |
210 |
ttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttg |
279 |
Q |
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| T |
23853105 |
ttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttg |
23853036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 74 - 279
Target Start/End: Complemental strand, 23752535 - 23752335
Alignment:
| Q |
74 |
cctatttaagttgtgttggttgtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagt |
173 |
Q |
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| T |
23752535 |
cctatttaagttgtgttggttgagtccc-----cgttgtgcccacccaacttacagcgttgcttcattcacttccctcaaatatgcatagaaaccaaagt |
23752441 |
T |
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| Q |
174 |
tttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctc |
273 |
Q |
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| T |
23752440 |
tatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcatttggttgcatagaacaagagaggcaagcac |
23752341 |
T |
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| Q |
274 |
ttcttg |
279 |
Q |
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| T |
23752340 |
ttcttg |
23752335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 22619863 - 22619732
Alignment:
| Q |
144 |
cttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcat |
243 |
Q |
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||||||| ||||||| ||||||||||||||| ||||||| |||||||| |||||||| |||| |||||||||||||||||| || |||||||||||| |
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| T |
22619863 |
cttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcat |
22619764 |
T |
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| Q |
244 |
ttggttgcatggaacaagagaggaaagctctt |
275 |
Q |
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| T |
22619763 |
ttggttgcttagaacaagagaggcaagctctt |
22619732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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