View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18017_low_13 (Length: 297)

Name: NF18017_low_13
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18017_low_13
NF18017_low_13
[»] chr5 (16 HSPs)
chr5 (9-279)||(37232887-37233157)
chr5 (8-105)||(17037572-17037669)
chr5 (12-107)||(40401987-40402082)
chr5 (9-96)||(42076085-42076172)
chr5 (35-105)||(9333562-9333632)
chr5 (8-105)||(5079038-5079135)
chr5 (10-101)||(19985028-19985119)
chr5 (35-105)||(9354390-9354460)
chr5 (14-102)||(7410856-7410944)
chr5 (10-105)||(23679470-23679565)
chr5 (10-105)||(23855246-23855341)
chr5 (18-96)||(10869475-10869552)
chr5 (18-105)||(30786296-30786383)
chr5 (42-105)||(31068971-31069033)
chr5 (10-105)||(12042152-12042248)
chr5 (71-105)||(18191886-18191920)
[»] chr2 (12 HSPs)
chr2 (9-107)||(11017484-11017582)
chr2 (8-105)||(15513696-15513793)
chr2 (7-96)||(24479190-24479279)
chr2 (8-105)||(31342690-31342787)
chr2 (9-105)||(7718214-7718310)
chr2 (9-105)||(30267032-30267128)
chr2 (10-105)||(41573422-41573517)
chr2 (9-102)||(44920989-44921082)
chr2 (8-102)||(7702461-7702555)
chr2 (8-95)||(22966564-22966651)
chr2 (8-101)||(40016624-40016718)
chr2 (9-105)||(26734777-26734873)
[»] chr8 (20 HSPs)
chr8 (17-105)||(6403622-6403710)
chr8 (8-105)||(19369884-19369981)
chr8 (8-105)||(45356086-45356183)
chr8 (11-102)||(6801807-6801898)
chr8 (14-105)||(28249055-28249146)
chr8 (8-105)||(19448477-19448574)
chr8 (8-105)||(19532502-19532599)
chr8 (10-105)||(25637673-25637768)
chr8 (35-105)||(29553658-29553728)
chr8 (8-105)||(5528772-5528869)
chr8 (8-105)||(17634445-17634542)
chr8 (9-105)||(25638836-25638932)
chr8 (7-105)||(5650918-5651016)
chr8 (10-105)||(29345460-29345556)
chr8 (17-105)||(31347378-31347466)
chr8 (10-101)||(6223434-6223525)
chr8 (10-105)||(18766946-18767041)
chr8 (56-96)||(5000717-5000757)
chr8 (9-96)||(31369081-31369168)
chr8 (11-105)||(14997650-14997744)
[»] chr3 (15 HSPs)
chr3 (17-105)||(16457314-16457402)
chr3 (12-105)||(26707888-26707981)
chr3 (8-105)||(2943188-2943285)
chr3 (10-105)||(1627923-1628018)
chr3 (8-105)||(13846021-13846118)
chr3 (9-105)||(7407729-7407825)
chr3 (14-105)||(2550195-2550286)
chr3 (10-87)||(26735681-26735758)
chr3 (10-102)||(9633418-9633510)
chr3 (10-94)||(36035329-36035413)
chr3 (8-105)||(1654605-1654702)
chr3 (10-102)||(27713415-27713507)
chr3 (29-105)||(1613208-1613284)
chr3 (18-105)||(5498507-5498594)
chr3 (63-101)||(27259474-27259512)
[»] chr1 (12 HSPs)
chr1 (10-105)||(12189981-12190076)
chr1 (16-103)||(3399653-3399740)
chr1 (6-105)||(28636932-28637031)
chr1 (32-105)||(16222807-16222880)
chr1 (8-105)||(51758782-51758879)
chr1 (17-105)||(897484-897571)
chr1 (38-105)||(13208641-13208708)
chr1 (55-105)||(1843981-1844031)
chr1 (55-105)||(5911685-5911735)
chr1 (46-105)||(15214356-15214415)
chr1 (55-105)||(15204623-15204673)
chr1 (9-105)||(39368614-39368711)
[»] chr6 (18 HSPs)
chr6 (8-105)||(16734834-16734931)
chr6 (7-105)||(6684123-6684220)
chr6 (8-105)||(15361744-15361841)
chr6 (9-105)||(23264471-23264567)
chr6 (10-105)||(14669322-14669417)
chr6 (8-105)||(11936741-11936838)
chr6 (8-105)||(11948721-11948818)
chr6 (8-105)||(12591862-12591959)
chr6 (18-106)||(29667899-29667987)
chr6 (8-105)||(17719697-17719794)
chr6 (10-94)||(4485541-4485625)
chr6 (8-105)||(9631128-9631226)
chr6 (10-105)||(34374854-34374951)
chr6 (10-96)||(10070693-10070778)
chr6 (55-105)||(23904373-23904423)
chr6 (32-96)||(2941044-2941108)
chr6 (21-96)||(7601321-7601395)
chr6 (55-103)||(10935802-10935850)
[»] chr7 (14 HSPs)
chr7 (7-105)||(9242457-9242555)
chr7 (10-105)||(30089764-30089859)
chr7 (10-96)||(16086525-16086611)
chr7 (7-105)||(26608512-26608610)
chr7 (8-105)||(4685377-4685474)
chr7 (8-105)||(26621065-26621162)
chr7 (17-105)||(26224961-26225049)
chr7 (21-107)||(3234354-3234441)
chr7 (8-91)||(20277334-20277417)
chr7 (8-102)||(10022156-10022250)
chr7 (14-105)||(26205395-26205486)
chr7 (10-106)||(27135957-27136053)
chr7 (55-96)||(16170309-16170350)
chr7 (18-82)||(26701083-26701147)
[»] scaffold0576 (1 HSPs)
scaffold0576 (8-105)||(6728-6825)
[»] chr4 (13 HSPs)
chr4 (8-105)||(1684926-1685023)
chr4 (8-105)||(43600296-43600393)
chr4 (9-105)||(24558970-24559066)
chr4 (9-105)||(47066009-47066105)
chr4 (7-102)||(37750963-37751058)
chr4 (8-105)||(1152073-1152170)
chr4 (11-87)||(21317485-21317561)
chr4 (9-101)||(21539247-21539338)
chr4 (9-105)||(53300380-53300476)
chr4 (38-105)||(4881073-4881140)
chr4 (56-107)||(48464067-48464118)
chr4 (9-48)||(48465459-48465498)
chr4 (38-103)||(4904144-4904209)
[»] scaffold0684 (1 HSPs)
scaffold0684 (7-105)||(720-818)
[»] scaffold0069 (1 HSPs)
scaffold0069 (8-105)||(40672-40769)
[»] scaffold0002 (1 HSPs)
scaffold0002 (14-96)||(446263-446345)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 37233157 - 37232887
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctttag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37233157 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctttag 37233058  T
Q  109 atctaaattatgttgtagtgtcgttagatacgaataattgattagtagtaagaataaggtggatttatcatggtaatattctttaaacgcaaacggggaa 208  Q
    |||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37233057 atctcaattatcttgtagtgtcgttagttacaaataattgattagtagtaagaataaggtggatttatcatggtaatattctttaaacgcaaacggggaa 37232958  T
Q  209 agatgctatatccttcgaaagaaactaaggaacggatctttgatttcaaaactgcaaattagatatgatag 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37232957 agatgctatatccttcgaaagaaactaaggaacggatctttgatttcaaaactgcaaattagatatgatag 37232887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 17037669 - 17037572
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||||| ||| ||||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  17037669 agataatactataaaatgtaactaaaactctttagtaacactgactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttctt 17037572  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 40401987 - 40402082
Alignment:
Q  12 aatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttcttta 107  Q
    |||||||||||||||| ||||| |||||||| ||||| |||| ||||||||||||| ||||| || ||||||||||||||||||| ||||||||||    
T  40401987 aatactataaaatgttgctgaagctttttagcaacacagactttacctaacaattgttcaaacgtaactaaatttaattagtaacatttttcttta 40402082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 42076172 - 42076085
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 96  Q
    |||||||||||||||| || ||||| ||||||||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||    
T  42076172 gataatactataaaatattcctgaagctttttagtaacatggactttatctaacaattgttcaaatgttactaaatttaattagtaac 42076085  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 9333562 - 9333632
Alignment:
Q  35 ctttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9333562 ctttttagtaacatcgactttacctaacaattgctcaaatgttactaaatttaattagtaacatttttctt 9333632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 5079038 - 5079135
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  5079038 agatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 5079135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 19985119 - 19985028
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 101  Q
    ||||||||||||||||| ||| ||||| |||||||||  ||||| ||||||||||||  |||||||||||||||| ||||||||||| ||||    
T  19985119 ataatactataaaatgtaactaaaactctttagtaacctggactttacctaacaattattcaaatgttactaaatctaattagtaacatttt 19985028  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 9354390 - 9354460
Alignment:
Q  35 ctttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  9354390 ctttttagtaacatgggctttacctaacaattgctcaaatgttattaaatttaattagtaacatttttctt 9354460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 7410944 - 7410856
Alignment:
Q  14 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 102  Q
    ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| |||||    
T  7410944 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattttt 7410856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 23679565 - 23679470
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||| ||| ||||| |||||||||||| ||| || |||| ||||| || |||||| | ||||||||||| |||| ||||||||    
T  23679565 ataatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaattaataacatttttctt 23679470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 23855246 - 23855341
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||| ||| ||||| |||||||||||| ||| || |||| ||||| || |||||| | ||||||||||| |||| ||||||||    
T  23855246 ataatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaattaataacatttttctt 23855341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 10869552 - 10869475
Alignment:
Q  18 ataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 96  Q
    ||||| |||||| | |||| |||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  10869552 ataaagtgttaccgtaactctttagtaagaggga-tatacctaacaattgttcaaatgttactaaatttaattagtaac 10869475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 30786383 - 30786296
Alignment:
Q  18 ataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||| ||| || ||||||||||||| ||  | ||||||||||||  ||||||||||||||||| ||| |||||| ||||||||    
T  30786383 ataaaatgtgactaaatctttttagtaacaaggcatttacctaacaattattcaaatgttactaaattgaatcagtaacatttttctt 30786296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 31068971 - 31069033
Alignment:
Q  42 gtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  31068971 gtaacacgggctttacctaacaattgttcaa-tgttactaaatttaattagtaacatttttctt 31069033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 12042152 - 12042248
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacgga-ctatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||| |||||||||| ||| ||||| |||||||| | |   || ||||||||||||| ||||||||||||||||| ||| |||||| ||||||||    
T  12042152 ataataatataaaatgtaactaaaactctttagtaataggtttctttacctaacaattgttcaaatgttactaaattgaatcagtaacatttttctt 12042248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 18191886 - 18191920
Alignment:
Q  71 aaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||||||||||||||||||| ||||||||    
T  18191886 aaatgttactaaatttaattagtaacatttttctt 18191920  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 11017582 - 11017484
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttcttta 107  Q
    |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||  |||||||||    
T  11017582 gataatactataaagtgttactgaagctttttagtaacacggactttacctaacaattggtcaaatgttactaaatttaattagtaacaattttcttta 11017484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 15513793 - 15513696
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| || |||||||||||||||  || ||||||||||||| |||| |||||| |||||||| ||||||| ||||||||    
T  15513793 agatagtactataaaatgtaactaaatctttttagtaacacgagctttacctaacaattgttcaagtgttacaaaatttaactagtaacatttttctt 15513696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 24479279 - 24479190
Alignment:
Q  7 tagataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 96  Q
    |||||||||||||||||| | ||| || || ||||||||||||  || ||||||| ||||| ||||||||||||||||||||||||||||    
T  24479279 tagataatactataaaatataactaaagctctttagtaacacgagctttacctaagaattgttcaaatgttactaaatttaattagtaac 24479190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 31342690 - 31342787
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| ||||  ||||||||||||| || || |||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  31342690 agatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 31342787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 7718310 - 7718214
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||| ||||||||||||| | | ||||| |||||||||||||||| || |||||||||| |||  ||||||||||||||||||||||  ||||||||    
T  7718310 gatagtactataaaatgtaattaaaactctttagtaacacggactttatctaacaattgttcatgtgttactaaatttaattagtaatatttttctt 7718214  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 30267128 - 30267032
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||| ||||||||||||| ||| ||||| ||| ||||||||| || ||||||||||||| |||  |||||||||||||||||| |||| ||||||||    
T  30267128 gatagtactataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttctt 30267032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 41573517 - 41573422
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||||| ||||    |||||||||||||  | ||||||||||||| | || ||||||||||||||||||||||| ||||||||    
T  41573517 ataatactataaaatgttattgaagtaatttagtaacacggggtttacctaacaattgtttaactgttactaaatttaattagtaacatttttctt 41573422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 44921082 - 44920989
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 102  Q
    |||| ||||||||||||| ||| ||||| ||||||||||||  || ||||||||||||| | |  ||||||||||||||||||||||| |||||    
T  44921082 gatagtactataaaatgtaactaaaactctttagtaacacgagctttacctaacaattgtttaggtgttactaaatttaattagtaacattttt 44920989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 7702555 - 7702461
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 102  Q
    ||||||||||| ||||||| ||| || || |||||||| | || || |||||||||||||  ||||||||||||| |||||||| |||| |||||    
T  7702555 agataatactacaaaatgtaactaaagctctttagtaatatgggctttacctaacaattgtacaaatgttactaattttaattaataacattttt 7702461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 22966651 - 22966564
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaa 95  Q
    |||||||||| |||||||| ||| ||  | |||||||||| || || ||||||||||||| | |||||| ||||||||| ||||||||    
T  22966651 agataatactctaaaatgtaactaaaggtctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttcattagtaa 22966564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 40016718 - 40016624
Alignment:
Q  8 agataatactataaaatgttactgaaa-ctttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 101  Q
    ||||||||| ||||||||| | | ||| || |||||||| | || || ||||||||||||  ||||||||||||||||||||| |||||| ||||    
T  40016718 agataatacaataaaatgtaattaaaatctctttagtaatagggtctttacctaacaattattcaaatgttactaaatttaatcagtaacatttt 40016624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 26734873 - 26734777
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||| | ||||||| |||| || || |||| ||| | ||||| ||||||||||||  |||||| || ||||||||||||| ||| |||||||||    
T  26734873 gataatattgtaaaatgatactaaagctctttaataatatggactttacctaacaattattcaaatattgctaaatttaattaataagttttttctt 26734777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 6403710 - 6403622
Alignment:
Q  17 tataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6403710 tataaaatgttactgaagctttttaataacacgggctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttctt 6403622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 19369884 - 19369981
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||| || |||||||||| || | |||| | |||||||||||||||| ||||||||    
T  19369884 agataatactataaaatgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttctt 19369981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 45356086 - 45356183
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  45356086 agatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 45356183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 6801807 - 6801898
Alignment:
Q  11 taatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 102  Q
    ||||||| |||||||| ||| ||||| |||||||||| || || ||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  6801807 taatactctaaaatgtaactaaaactctttagtaacaggggctttacctaacaattgttcaactgttactaaatttaattagtaacattttt 6801898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 28249055 - 28249146
Alignment:
Q  14 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  28249055 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 28249146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 19448574 - 19448477
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||| | ||| ||||| |||||||||||||||| || |||||||||| || | |||| | |||||||||||||||| ||||||||    
T  19448574 agataatactataaaatataactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttctt 19448477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 19532502 - 19532599
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||| | ||| ||||| |||||||||||||||| || |||||||||| || | |||| | |||||||||||||||| ||||||||    
T  19532502 agataatactataaaatataactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttctt 19532599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 25637768 - 25637673
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||| ||| ||| | ||||||||||||| || ||||||||||||| || | |||| ||||||||||||||||||  |||||||    
T  25637768 ataatactataaaatgtaactaaaattctttagtaacacgggctttacctaacaattgttcgagtgttgctaaatttaattagtaacagttttctt 25637673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 29553728 - 29553658
Alignment:
Q  35 ctttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||||||||  || || |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  29553728 ctttttagtaacacgcgctttaactaacaattgctcaaatgttgctaaatttaattagtaacatttttctt 29553658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 5528869 - 5528772
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||| |||||||| ||| ||||| ||||||||||| |||| || |||||||||| |  | |||| |||||||||||||||||| ||||||||    
T  5528869 agataatactgtaaaatgtaactaaaactctttagtaacacagactttatctaacaattgtttgagtgttgctaaatttaattagtaacatttttctt 5528772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 17634445 - 17634542
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| ||  | ||||||||||||| || |||||| |||||| |||| ||||| ||||||||||||||||| ||||||||    
T  17634445 agatagtactataaaatgtaactaaatttctttagtaacacgggctttacctatcaattgttcaagtgttattaaatttaattagtaacatttttctt 17634542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 25638932 - 25638836
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||| ||||||||||||| ||| ||||  |||||||||| ||  | ||||||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  25638932 gatagtactataaaatgtaactaaaacactttagtaacatgggttttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 25638836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 5650918 - 5651016
Alignment:
Q  7 tagataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||| ||||||||  ||| || |||||| |||||| ||  | ||||||||||||| ||||||||| ||||||| |||||||||| ||||||||    
T  5650918 tagataataccataaaatgcaactaaagcttttttgtaacaagggttttacctaacaattgttcaaatgttgctaaattgaattagtaacatttttctt 5651016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 29345556 - 29345460
Alignment:
Q  10 ataatactataaaatgttactgaaactt-tttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||| ||| ||  || |||||||| | || || ||||||||||||| ||||| |||||||||||||||||||||  ||||||||    
T  29345556 ataatactataaaatgtaactaaagtttgtttagtaagaggggctttacctaacaattgttcaaaggttactaaatttaattagtaatatttttctt 29345460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 31347466 - 31347378
Alignment:
Q  17 tataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||||||||||  |  |||||||||| |  | || |||||||||| |||||||||||||||||||||||||| | ||||||||    
T  31347466 tataaaatgttactgaagatggttagtaacacaggatttatctaacaattgatcaaatgttactaaatttaattagtagcatttttctt 31347378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 6223525 - 6223434
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 101  Q
    |||||| |||||| ||| ||| ||||| ||||||||||||  || ||||||||||||   |||||||||||||||||||| |||||| ||||    
T  6223525 ataatattataaagtgtaactaaaactctttagtaacacgcgctttacctaacaattttacaaatgttactaaatttaatcagtaacgtttt 6223434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 18767041 - 18766946
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||| ||| ||||| |||||||||||| ||| ||||||||||||| |  | |||| | ||||||||||| |||  ||||||||    
T  18767041 ataatactataaaatgtaactaaaactctttagtaacacgtactttacctaacaattgtttgagtgttgcaaaatttaattaataatatttttctt 18766946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 5000757 - 5000717
Alignment:
Q  56 acctaacaattgctcaaatgttactaaatttaattagtaac 96  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  5000757 acctaactattgctcaaatgttactaaatttaattagtaac 5000717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 31369081 - 31369168
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 96  Q
    |||||| ||||||||||| ||||||||| ||||||||||    || ||| ||||| ||| | |||||| |||||| ||||||||||||    
T  31369081 gataatcctataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaac 31369168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 14997744 - 14997650
Alignment:
Q  11 taatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||| || ||| || || |||||||||| ||  | ||||||||||||   ||||||||||||| |||||  |||||| ||||||||    
T  14997744 taatactataaaaggtaactaaagctctttagtaacatgggttttacctaacaattctacaaatgttactaattttaaccagtaacatttttctt 14997650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 16457314 - 16457402
Alignment:
Q  17 tataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||| |||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16457314 tataaaatgttactgaagctttttagtaacacgagctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttctt 16457402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 26707981 - 26707888
Alignment:
Q  12 aatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||| ||||||||||||| || ||||||||||  |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  26707981 aatactatgaaatgttactgaacctctttagtaacagagactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttctt 26707888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 2943188 - 2943285
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||||| ||| ||||  ||||||||||||| ||  |||||||||||| || ||||||||||||||||||||||||| ||||||||    
T  2943188 agataatactataaaatgtaactaaaacactttagtaacacgggcttaacctaacaattgttcgaatgttactaaatttaattagtaacatttttctt 2943285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 1627923 - 1628018
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||| ||| ||||| ||| |||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||  ||||||||    
T  1627923 ataatactataaaatgtaactaaaactcttttgtaacacggactttacttaacaattgttcaagtgttactaaatttaattagtaatatttttctt 1628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 13846118 - 13846021
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  13846118 agatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 13846021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 7407729 - 7407825
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||  ||||||||    
T  7407729 gatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaatatttttctt 7407825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 2550286 - 2550195
Alignment:
Q  14 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||| ||| ||||  ||||||||||| | || ||||||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  2550286 tactataaaatgtaactaaaacactttagtaacacaggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 2550195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 26735758 - 26735681
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaattta 87  Q
    |||||||||| |||||||| |||| || |||||||||| ||| | ||||||||||||| |||||||||||||||||||    
T  26735758 ataatactatgaaatgttattgaagctctttagtaacatggattttacctaacaattgttcaaatgttactaaattta 26735681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 9633418 - 9633510
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 102  Q
    ||||| || |||||||| ||| ||||| |||||||||| || || ||||||||||||| | |||||| ||||||||||||||||||| |||||    
T  9633418 ataatgctctaaaatgtaactaaaactctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttaattagtaacattttt 9633510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 36035413 - 36035329
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagta 94  Q
    ||||||||||||||||| ||| || || ||||||||||||  || |||||||||||||  ||| |||||||||||||||||||||    
T  36035413 ataatactataaaatgtaactaaagctctttagtaacacgagctttacctaacaattgtacaattgttactaaatttaattagta 36035329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 1654702 - 1654605
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| ||||  |||| |||||| | || ||| ||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  1654702 agatagtactataaaatgtaactaaaacactttaataacacaggctttacttaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 1654605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 27713415 - 27713507
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 102  Q
    ||||||||||||||| || || ||||| ||||||||||  |  | | ||||||||||  | ||||||||||||||||||||||||||||||||    
T  27713415 ataatactataaaatattgctaaaactatttagtaacataggttttgcctaacaattatttaaatgttactaaatttaattagtaactttttt 27713507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 1613208 - 1613284
Alignment:
Q  29 ctgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| || |||||||||| || || ||||||| ||||| |||| |||||||||||||| |||||||| ||||||||    
T  1613208 ctgaagctatttagtaacaggggctttacctaaaaattggtcaactgttactaaatttatttagtaacatttttctt 1613284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 5498594 - 5498507
Alignment:
Q  18 ataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||| ||||  ||||| ||||||||||  |  | ||||||||||||| ||| | |||||||||||||||||||||| ||||||||    
T  5498594 ataaaatattaccaaaactctttagtaacataggttttacctaacaattgttcagaagttactaaatttaattagtaacatttttctt 5498507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 27259474 - 27259512
Alignment:
Q  63 aattgctcaaatgttactaaatttaattagtaacttttt 101  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  27259474 aattgttcaaatgttactaaatttaattagtaacatttt 27259512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 12190076 - 12189981
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||  ||||| ||||| ||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  12190076 ataatactataaaaaattactaaaactctttagtaacacgggctttacctaacaattgttcaaatgttactaaatttaattagtaatatttttctt 12189981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 3399740 - 3399653
Alignment:
Q  16 ctataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttc 103  Q
    ||||||| |||||| ||| || ||||||||||  || | ||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  3399740 ctataaagtgttaccgaagctatttagtaacatagattttacctaacaattgttcaaatgttactaaatttaattagtaacatttttc 3399653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 28637031 - 28636932
Alignment:
Q  6 gtagataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||| ||||||||||||| ||| || || ||||| ||||  |||| ||||||||||||  ||||||||||||||||| |||||||||| ||||||||    
T  28637031 gtagatattactataaaatgtaactaaatctctttagcaacagtgactttacctaacaattattcaaatgttactaaattgaattagtaacatttttctt 28636932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 16222880 - 16222807
Alignment:
Q  32 aaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| || ||||||||||||  |||| ||||||||||||| ||||||||| ||||||||    
T  16222880 aaactctttagtaacacgggctttacctaacaattattcaagtgttactaaattttattagtaacatttttctt 16222807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 51758879 - 51758782
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||||| ||| ||||| |||||||| |||  || ||||||| ||||| || | |||| ||||||||||||| |||| ||||||||    
T  51758879 agataatactataaaatgtaactaaaactctttagtaatacgagctttacctaataattgttcgagtgttgctaaatttaattactaacatttttctt 51758782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 897571 - 897484
Alignment:
Q  17 tataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||| |||  | || |||||||||| | ||| ||||||||||||| |||| ||||||||||||||||||| ||| ||||||||    
T  897571 tataaaatgtaactatagctctttagtaacatgaact-tacctaacaattgttcaattgttactaaatttaattaggaacatttttctt 897484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 13208708 - 13208641
Alignment:
Q  38 tttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||||||  | ||||||||||| | |||| || |||||||||||||||||||| ||||||||    
T  13208708 tttagtaacacgggttttacctaacaatggttcaagtggtactaaatttaattagtaacatttttctt 13208641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 1844031 - 1843981
Alignment:
Q  55 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||| ||||||||||||||||| ||| |||||| ||||||||    
T  1844031 tacctaacaattgttcaaatgttactaaattcaatcagtaacatttttctt 1843981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 5911685 - 5911735
Alignment:
Q  55 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||| |||| |||||||||||||||| |||||| ||||||||    
T  5911685 tacctaacaattgttcaagtgttactaaatttaatcagtaacatttttctt 5911735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 15214415 - 15214356
Alignment:
Q  46 cacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||| ||| |||| |||||||| |||||| ||||||||||||||||||||  ||||||||    
T  15214415 cacgaactttacccaacaattgttcaaatattactaaatttaattagtaaaatttttctt 15214356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 15204673 - 15204623
Alignment:
Q  55 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||| |||| |||||||||||||| |||| ||| ||||||||    
T  15204673 tacctaacaattgttcaagtgttactaaatttagttagcaacatttttctt 15204623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 39368614 - 39368711
Alignment:
Q  9 gataatactataaaa-tgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||| ||| |||||| || ||||||| || |  || | |||||||||||   |||||| ||||| ||||||||||||| ||||||||    
T  39368614 gataatactataaaaatgtaactgaagctctttagtagcatgtgctttgcctaacaattgtataaatgtgactaattttaattagtaacatttttctt 39368711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 16734931 - 16734834
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  16734931 agatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaaatgttgctaaatttaattagtaacatttttctt 16734834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 6684220 - 6684123
Alignment:
Q  7 tagataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||||||||||||| ||| ||||| |||||||||| ||||| |||||||||| || || | ||||||||||||||||||||||| ||||||||    
T  6684220 tagataatactataaaatgtaactaaaactctttagtaacatggactttacctaacaa-tgttcgagtgttactaaatttaattagtaacatttttctt 6684123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 15361841 - 15361744
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| |||| |||||||||||| | || ||||||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  15361841 agatagtactataaaatgtaactaaaacattttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 15361744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 23264471 - 23264567
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||||||| | || ||||| || |||||||||||||| | ||||||||||||| || |||||||||||||||||||||||||  |||||||    
T  23264471 gataatactataaagttttgctgaagctctttagtaacacggattttacctaacaattgttcgaatgttactaaatttaattagtaacaattttctt 23264567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 14669322 - 14669417
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||||||  || | |||| | |||||||||||||||| ||||||||    
T  14669322 ataatactataaaatgtaactaaaactctttagtaacacggactttacctaacaattattcgagtgttgcaaaatttaattagtaacatttttctt 14669417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 11936741 - 11936838
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| ||||  ||||||||||||| || || |||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  11936741 agatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 11936838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 11948721 - 11948818
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| ||||  ||||||||||||| || || |||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  11948721 agatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 11948818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 12591959 - 12591862
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||| ||| ||| ||||| ||||||||||||| || ||||||||||||| || |  ||||||||||||||||| |||| ||||||||    
T  12591959 agataatactataaattgtaactaaaactctttagtaacacgggctttacctaacaattgttcgagcgttactaaatttaattactaacatttttctt 12591862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 29667899 - 29667987
Alignment:
Q  18 ataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttcttt 106  Q
    ||||||||||||| || || |||| ||||||   || ||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  29667899 ataaaatgttactaaatctctttaataacacaagctttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttt 29667987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 17719697 - 17719794
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||| ||| ||| ||||| |||||||||||||||| || |||||||||| || | |||| | ||| |||||||||||| ||||||||    
T  17719697 agataatactataaattgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaaattaattagtaacatttttctt 17719794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 4485541 - 4485625
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagta 94  Q
    ||||| ||||| | ||||||| ||||| |||| ||||||||||| ||||||||||||  |||||| |||||||||||||||||||    
T  4485541 ataattctatagattgttactaaaactatttaataacacggactttacctaacaattattcaaatattactaaatttaattagta 4485625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 9631128 - 9631226
Alignment:
Q  8 agataatactataaaa-tgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||| ||||| ||| ||| ||||| | |||||||| || |||| ||||||||||| ||||||||||||||||||| |||||||| || |||||    
T  9631128 agataatactctaaaaatgtaactaaaactctatagtaacaggggctatgcctaacaattgttcaaatgttactaaatttacttagtaacgttcttctt 9631226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 34374951 - 34374854
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaa--ttgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||| ||||| ||||| ||||||||||| || | | ||||||||  ||| ||||||||||| |||| ||||||||||| ||||||||    
T  34374951 ataatactataaaatattactcaaactctttagtaacacagattttgcctaacaattttgttcaaatgttacaaaatataattagtaacatttttctt 34374854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 10070778 - 10070693
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 96  Q
    ||||||||||||||||| ||| |||||||| ||||||||||||| ||| ||||||||  |  | ||||| |||||||||||||||||    
T  10070778 ataatactataaaatgtaactaaaactttt-agtaacacggactttacgtaacaattatttgagtgttattaaatttaattagtaac 10070693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 23904373 - 23904423
Alignment:
Q  55 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  23904373 tacctaacaattgttcaaatgttactaaattgatttagtaacttttttctt 23904423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 2941108 - 2941044
Alignment:
Q  32 aaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 96  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||||||||||  |||||||||||    
T  2941108 aaacattttagtaacacaaactttacctaacatttgctcaaatgttactaaacataattagtaac 2941044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 7601321 - 7601395
Alignment:
Q  21 aaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 96  Q
    ||||||||||||||   |||||||||||||||| ||||||||| ||| ||||||||||| | || ||| |||||||    
T  7601321 aaatgttactgaaatcatttagtaacacggactttacctaacatttg-tcaaatgttacaagatctaaatagtaac 7601395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 10935802 - 10935850
Alignment:
Q  55 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttc 103  Q
    ||||||||||||| ||||||||||||  || ||||||||||| ||||||    
T  10935802 tacctaacaattgttcaaatgttactggatataattagtaacatttttc 10935850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 9242457 - 9242555
Alignment:
Q  7 tagataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||||||||||||| ||| ||||| |||||||||| ||||| || |||||||||| |||| |||||| ||||||||||||||||  |||||||    
T  9242457 tagataatactataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcaagtgttacaaaatttaattagtaacaattttctt 9242555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 30089859 - 30089764
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||| ||| || || |||||||||| || || | ||||||||||| |||||||||||||||| |||| |||||| ||||||||    
T  30089859 ataatactataaaatgtaactaaagctctttagtaacatgggcttttcctaacaattgttcaaatgttactaaatataatcagtaacatttttctt 30089764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 16086611 - 16086525
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 96  Q
    |||||||||||||||||||||||| || || ||||||| |  || ||||||||||||  |||||||||| |||||||||||||||||    
T  16086611 ataatactataaaatgttactgaagctattaagtaacatgagctttacctaacaattattcaaatgttattaaatttaattagtaac 16086525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 26608512 - 26608610
Alignment:
Q  7 tagataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||| ||||||||||||  ||| || || |||||||||| || || || |||||||||| ||||||||||||||||||||| |||||| ||||||||    
T  26608512 tagatagtactataaaatgcaactaaagctctttagtaacatgggctttatctaacaattgttcaaatgttactaaatttaatcagtaacatttttctt 26608610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 4685377 - 4685474
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| ||||  |||||||| |||| || ||||||||||||| |||| |||| ||||||||||||| |||| ||||||||    
T  4685377 agatagtactataaaatgtaactaaaacactttagtaatacgggctttacctaacaattgttcaagtgttgctaaatttaattactaacatttttctt 4685474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 26621065 - 26621162
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||||| ||| || || |||||||||| ||  | || |||||||||| | ||||||| ||||||||||| |||||| ||||||||    
T  26621065 agataatactataaaatgtaactaaagctctttagtaacatggcttttatctaacaattgtttaaatgttgctaaatttaatcagtaacatttttctt 26621162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 26224961 - 26225049
Alignment:
Q  17 tataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||  ||| ||||| ||||||||||| | || ||||||| ||||| |||| ||||||||||||||||||||| | ||||||||    
T  26224961 tataaaatgaaactaaaactctttagtaacaccggctttacctaataattgttcaagtgttactaaatttaattagtatcatttttctt 26225049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 3234441 - 3234354
Alignment:
Q  21 aaatgttactgaaactttttagtaacacggactatacctaa-caattgctcaaatgttactaaatttaattagtaacttttttcttta 107  Q
    ||||||||||||| || |||||||||||||||| |||||||  ||||| ||||||||||||||||| | |||||| | ||||| ||||    
T  3234441 aaatgttactgaagctatttagtaacacggactttacctaataaattggtcaaatgttactaaattaatttagtaccattttttttta 3234354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 20277334 - 20277417
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaatta 91  Q
    ||||||||||||| ||||| ||| || || |||||||||| |  || ||||||||||||| | |||||||||||||||||||||    
T  20277334 agataatactatataatgtaactaaagctctttagtaacaggtgctttacctaacaattgtttaaatgttactaaatttaatta 20277417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 10022250 - 10022156
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 102  Q
    ||||| || |||||||||| ||| ||| | ||||||||||||  || ||||||||||||| |||  |||||||||| |||||||||||| |||||    
T  10022250 agatagtaatataaaatgtaactaaaattctttagtaacacgagctttacctaacaattgttcatgtgttactaaacttaattagtaacattttt 10022156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 26205395 - 26205486
Alignment:
Q  14 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||| |||||  ||| ||||| |||||||||||   || |||||| |||||  |||| ||||||||||||||||||||||| ||||||||    
T  26205395 tactatcaaatgaaactaaaactctttagtaacaccagctttacctaccaatttttcaagtgttactaaatttaattagtaacatttttctt 26205486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 27136053 - 27135957
Alignment:
Q  10 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttcttt 106  Q
    ||||||| | ||| |||||| |||||| ||||||||||| | || || |||||||||| |||||||||| || || |||| | |||| |||||||||    
T  27136053 ataataccaaaaactgttaccgaaactctttagtaacacaggctttatctaacaattgttcaaatgttattagatataatcaataacatttttcttt 27135957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 16170350 - 16170309
Alignment:
Q  55 tacctaacaattgctcaaatgttactaaatttaattagtaac 96  Q
    ||||||||||||| | || |||||||||||||||||||||||    
T  16170350 tacctaacaattgtttaagtgttactaaatttaattagtaac 16170309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 26701147 - 26701083
Alignment:
Q  18 ataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaa 82  Q
    ||||| ||||||||||  | ||||||||||||| || |||||||||||||  ||| |||||||||    
T  26701147 ataaagtgttactgaagttatttagtaacacgggctttacctaacaattggccaactgttactaa 26701083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 6825 - 6728
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| |||| |||||||||||| | || ||||||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  6825 agatagtactataaaatgtaactaaaacattttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 6728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 1684926 - 1685023
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||| ||| ||| ||||| |||||||||||||||| || |||||||||| || | |||| | |||||||||||||||| ||||||||    
T  1684926 agataatactataaattgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttctt 1685023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 43600393 - 43600296
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| | || |||||||||||||||||| ||||||||    
T  43600393 agatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagttttgctaaatttaattagtaacatttttctt 43600296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 24558970 - 24559066
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||||||||| | ||| ||| | ||||||||||| | |  ||||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  24558970 gataatactataaaatatcactaaaattctttagtaacacagccgttacctaacaatcgttcaaatgttactaaatttaattagtaacatttttctt 24559066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 47066009 - 47066105
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||| ||||||||||||| ||| ||||| ||| ||||||||| || ||||||||||||| |||  |||||||||||||||||| |||| ||||||||    
T  47066009 gatagtactataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttctt 47066105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 37750963 - 37751058
Alignment:
Q  7 tagataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 102  Q
    |||||||||||||||||||| ||| || ||| |||||||||  | || || ||||||||||| ||||||||||| | ||||||||||||| |||||    
T  37750963 tagataatactataaaatgtaactaaagcttcttagtaacattggctttatctaacaattgcgcaaatgttactgattttaattagtaacattttt 37751058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 1152170 - 1152073
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||| |||||| ||| ||| ||||| |||||||||||||||| || |||||||||| |  | |||| | |||||||||||||||| ||||||||    
T  1152170 agataatattataaactgtaactaaaactctttagtaacacggactttatctaacaattgtttgagtgttgcaaaatttaattagtaacatttttctt 1152073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 21317561 - 21317485
Alignment:
Q  11 taatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaattta 87  Q
    |||||| ||||||||||| |||| | |||||||||||| | || ||||||||||||| | |||||||||||||||||    
T  21317561 taatacaataaaatgttagtgaagcattttagtaacacagcctttacctaacaattgttgaaatgttactaaattta 21317485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 21539247 - 21539338
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 101  Q
    |||||||||| ||||||| ||| || || |||||||||| ||||| || |||||||||| | ||||||||||||||||||| |||||| ||||    
T  21539247 gataatactaaaaaatgtaactaaatctctttagtaacaaggact-tatctaacaattgtttaaatgttactaaatttaatcagtaacatttt 21539338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 53300476 - 53300380
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||| ||| ||||||||| ||| ||||| ||| ||||||||| || ||||||||||||| | |  |||||||||||||||||| |||| ||||||||    
T  53300476 gatagtacgataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgtttaggtgttactaaatttaattactaacatttttctt 53300380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 4881073 - 4881140
Alignment:
Q  38 tttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||||||||| ||||||||||||   ||||| |||||||||||||| |||||| ||||||||    
T  4881073 tttagtaacacggactttacctaacaattatacaaatattactaaatttaatcagtaacatttttctt 4881140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 48464118 - 48464067
Alignment:
Q  56 acctaacaattgctcaaatgttactaaatttaattagtaacttttttcttta 107  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  48464118 acctaacaattgttcaaatgttactaaatttaattagtaacatttttattta 48464067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 48465498 - 48465459
Alignment:
Q  9 gataatactataaaatgttactgaaactttttagtaacac 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48465498 gataatactataaaatgttactgaaactttttagtaacac 48465459  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 4904144 - 4904209
Alignment:
Q  38 tttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttc 103  Q
    |||||||||| |  || |||||||||||||  |||||||||||||||||||| |||||| ||||||    
T  4904144 tttagtaacaagtgctttacctaacaattgtacaaatgttactaaatttaatcagtaacatttttc 4904209  T

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Target: scaffold0684 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 720 - 818
Alignment:
Q  7 tagataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    |||||||||||||||||||| ||| ||||| |||||||||| ||||| || |||||||||| || | |||| | ||||||||||||||||  |||||||    
T  720 tagataatactataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttctt 818  T

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Target: scaffold0069 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 40672 - 40769
Alignment:
Q  8 agataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 105  Q
    ||||||||||||||||||| ||| ||||| |||||||||| ||||| || |||||||||| || | |||| | ||||||||||||||||  |||||||    
T  40672 agataatactataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttctt 40769  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 446263 - 446345
Alignment:
Q  14 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 96  Q
    ||||||||| ||||||| || || |||||||| | ||||| | ||||||||||| ||||||||||| |||||||||| |||||    
T  446263 tactataaagtgttactaaagctctttagtaatatggacttttcctaacaattgttcaaatgttaccaaatttaattggtaac 446345  T

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