View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18017_low_16 (Length: 260)

Name: NF18017_low_16
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18017_low_16
NF18017_low_16
[»] chr8 (20 HSPs)
chr8 (18-251)||(4725746-4725979)
chr8 (22-157)||(4745221-4745356)
chr8 (18-157)||(4680848-4680987)
chr8 (152-239)||(4745442-4745529)
chr8 (17-94)||(4890905-4890982)
chr8 (18-95)||(10446232-10446309)
chr8 (21-142)||(4688485-4688603)
chr8 (17-95)||(4714313-4714391)
chr8 (18-109)||(4702978-4703069)
chr8 (18-87)||(4904954-4905023)
chr8 (151-249)||(4681080-4681178)
chr8 (19-80)||(4777121-4777182)
chr8 (18-95)||(4995775-4995852)
chr8 (24-80)||(4736227-4736283)
chr8 (24-65)||(4875927-4875968)
chr8 (18-59)||(4925826-4925867)
chr8 (18-66)||(21440144-21440192)
chr8 (18-60)||(4914096-4914138)
chr8 (117-157)||(4736317-4736357)
chr8 (152-192)||(4736439-4736479)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 4725746 - 4725979
Alignment:
Q  18 aaagggactccattcatttcagctatagaattgaggattttgaacaataaaacttatgtcacacactcagctaaatcatcagtattatcactttcctttc 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4725746 aaagggactccattcatttcagctatagaattgaggactttgaacaataaaacttatgtcacacactcagctaaatcatcagtattatcactttcctttc 4725845  T
Q  118 gatttgatataggttccatcacaaatttacagtacaggtacaaagacgatgtttatgaccgtgtctggtttccttttcaattgaatgaaatgaaacgatt 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4725846 gatttgatataggttccatcacaaatttacaatacaggtacaaagacgatgtttatgaccgtgtctggtttccttttcaattgaatgaaatgaaacgatt 4725945  T
Q  218 aagcaccaatgatgatctattaattcagaataat 251  Q
    ||||||||||||||||||||||||||||||||||    
T  4725946 aagcaccaatgatgatctattaattcagaataat 4725979  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 4745221 - 4745356
Alignment:
Q  22 ggactccattcatttcagctatagaattgaggattttgaacaataaaacttatgtcacacactcagctaaatcatcagtattatcactttcctttcgatt 121  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | |||||| || | |||||| ||||||||||||||||||||||||||||||||     
T  4745221 ggactccattcatttcagctatagaattgaggagtttgaacaatacagcttatggcaaatactcagataaatcatcagtattatcactttcctttcgatc 4745320  T
Q  122 tgatataggttccatcacaaatttacagtacaggta 157  Q
     |||||||||||||||||||| ||||| ||||||||    
T  4745321 ggatataggttccatcacaaacttacaatacaggta 4745356  T

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Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 4680848 - 4680987
Alignment:
Q  18 aaagggactccattcatttcagctatagaattgaggattttgaacaataaaacttatgtcacacactcagctaaatcatcagtattatcactttcctttc 117  Q
    ||||||||||| ||||||||||| ||||||||||||| |||| | |||||| ||||||||||| || |||||||||||||||||||||||   | |||||    
T  4680848 aaagggactccgttcatttcagccatagaattgaggactttggataataaagcttatgtcacatacgcagctaaatcatcagtattatcatacttctttc 4680947  T
Q  118 gatttgatataggttccatcacaaatttacagtacaggta 157  Q
    |||||||| |||||||||||||||| ||| | ||||||||    
T  4680948 gatttgatttaggttccatcacaaacttagaatacaggta 4680987  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 4745442 - 4745529
Alignment:
Q  152 caggtacaaagacgatgtttatgaccgtgtctggtttccttttcaattgaatgaaatgaaacgattaagcaccaatgatgatctatta 239  Q
    |||||||||||| |||||| |||| ||  ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  4745442 caggtacaaagatgatgttaatgatcgcatctggtttccttttcaattgaatgagatgaaacgattaagcaccaatgaggatctatta 4745529  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 4890982 - 4890905
Alignment:
Q  17 aaaagggactccattcatttcagctatagaattgaggattttgaacaataaaacttatgtcacacactcagctaaatc 94  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||||| |||||||||||||    
T  4890982 aaaagggactccattcatttcagctatagaattgaggcctttgaacaatacagcttatgtcacatactcagctaaatc 4890905  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 10446232 - 10446309
Alignment:
Q  18 aaagggactccattcatttcagctatagaattgaggattttgaacaataaaacttatgtcacacactcagctaaatca 95  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||  |||||||||||||||||||    
T  10446232 aaagggattccattcatttcagctatagaattgaggactttgaacaataatacttataccacacactcagctaaatca 10446309  T

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Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 4688485 - 4688603
Alignment:
Q  21 gggactccattcatttcagctatagaattgaggattttgaacaataaaacttatgtcacacactcagctaaatcatcagtattatcactttcctttcgat 120  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||   ||||||||||| ||||| ||||| ||   |||||||||   | | ||||||    
T  4688485 gggactccattcatttcatctatagaattgaggactttgaacaatactgcttatgtcacaaactcaactaaaaca---gtattatcaaacttccttcgat 4688581  T
Q  121 ttgatataggttccatcacaaa 142  Q
    ||||||||||||||||||||||    
T  4688582 ttgatataggttccatcacaaa 4688603  T

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Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 4714313 - 4714391
Alignment:
Q  17 aaaagggactccattcatttcagctatagaattgaggattttgaacaataaaacttatgtcacacactcagctaaatca 95  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||| ||  |||||||||| ||||||||||||||    
T  4714313 aaaagggactccattcatttcagttatagaattgaggactttgaacaatgaagtttatgtcacaaactcagctaaatca 4714391  T

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Target: chr8; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 4702978 - 4703069
Alignment:
Q  18 aaagggactccattcatttcagctatagaattgaggattttgaacaataaaacttatgtcacacactcagctaaatcatcagtattatcact 109  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||| | ||| ||||||||   |||||||||||    
T  4702978 aaagggactccattcatttcagttattgaattgaggactttgaacaataaagcttatgtcacatattcatctaaatcaattgtattatcact 4703069  T

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Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 4905023 - 4904954
Alignment:
Q  18 aaagggactccattcatttcagctatagaattgaggattttgaacaataaaacttatgtcacacactcag 87  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||||||| | ||||||||||| ||||||    
T  4905023 aaagggactccattcatttcagccatagaattgaggcctttgaacaatagagcttatgtcacaaactcag 4904954  T

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Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 4681080 - 4681178
Alignment:
Q  151 acaggtacaaagacgatgtttatgaccgtgtctggtttccttttcaattgaatgaaatgaaacgattaagcaccaatgatgatctattaattcagaata 249  Q
    ||||||||||||| |||||||  || ||  |||||| | ||||| ||| |||||| ||||||||| |||||||||| |||||| |||||||||||||||    
T  4681080 acaggtacaaagatgatgttttagatcgcatctggtatgcttttgaatggaatgagatgaaacgaataagcaccaaagatgatatattaattcagaata 4681178  T

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Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 4777182 - 4777121
Alignment:
Q  19 aagggactccattcatttcagctatagaattgaggattttgaacaataaaacttatgtcaca 80  Q
    ||||||||||||||||||| |||||||||||||||  |||||||||| ||||||| ||||||    
T  4777182 aagggactccattcatttcggctatagaattgaggcctttgaacaatgaaacttacgtcaca 4777121  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 4995775 - 4995852
Alignment:
Q  18 aaagggactccattcatttcagctatagaattgaggattttgaacaataaaacttatgtcacacactcagctaaatca 95  Q
    |||||||||||||||||||| ||||| |||||||||  ||||||||||| | ||||| ||||| ||||| ||||||||    
T  4995775 aaagggactccattcatttctgctattgaattgaggcctttgaacaatacagcttatatcacatactcacctaaatca 4995852  T

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Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 4736227 - 4736283
Alignment:
Q  24 actccattcatttcagctatagaattgaggattttgaacaataaaacttatgtcaca 80  Q
    |||||||||||||||| |||||||||||||| ||||||||| | | |||||||||||    
T  4736227 actccattcatttcagttatagaattgaggactttgaacaacacagcttatgtcaca 4736283  T

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Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 4875968 - 4875927
Alignment:
Q  24 actccattcatttcagctatagaattgaggattttgaacaat 65  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  4875968 actccattcatttcagttatagaattgaggactttgaacaat 4875927  T

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Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 4925867 - 4925826
Alignment:
Q  18 aaagggactccattcatttcagctatagaattgaggattttg 59  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  4925867 aaagggactccattcatttcaactatagaattgaggactttg 4925826  T

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Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 21440192 - 21440144
Alignment:
Q  18 aaagggactccattcatttcagctatagaattgaggattttgaacaata 66  Q
    ||||||||||||||||||||||| ||||||||||||  | |||||||||    
T  21440192 aaagggactccattcatttcagccatagaattgagggctatgaacaata 21440144  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 4914138 - 4914096
Alignment:
Q  18 aaagggactccattcatttcagctatagaattgaggattttga 60  Q
    |||||||||||||||||||||| | |||||||||||| |||||    
T  4914138 aaagggactccattcatttcagttttagaattgaggactttga 4914096  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 4736317 - 4736357
Alignment:
Q  117 cgatttgatataggttccatcacaaatttacagtacaggta 157  Q
    |||| |||| |||||||||||||||| ||||||||||||||    
T  4736317 cgatctgatgtaggttccatcacaaacttacagtacaggta 4736357  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 4736439 - 4736479
Alignment:
Q  152 caggtacaaagacgatgtttatgaccgtgtctggtttcctt 192  Q
    |||||||||||| ||||||||||||||  ||||||||||||    
T  4736439 caggtacaaagatgatgtttatgaccgcatctggtttcctt 4736479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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