View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18017_low_19 (Length: 250)
Name: NF18017_low_19
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18017_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 41987768 - 41987532
Alignment:
| Q |
13 |
aaaatattacgtaatactannnnnnnnatttaccaataaatttacgtatcaagtatcaaccactgaatccaaccaaggtaagcaattacgtatgctgcaa |
112 |
Q |
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| T |
41987768 |
aaaatattacgtaatactattttttttatttaccaataaatttacgtatcaagtatcaaccaccgaatccaaccaaggtaagcaattacgtatgctgcaa |
41987669 |
T |
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| Q |
113 |
tccgtataatatatgcactcatgtcaaattaaataaaatattacgcat-tcattgcgagcttatcttagttaatatagataatgcataatatatacaaga |
211 |
Q |
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| T |
41987668 |
tccgtataatatatgcactcatgtcaaattaaataaaatatta--catgtcattgtgagcttatctaagttaatatctataatgtataatatatggaagg |
41987571 |
T |
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| Q |
212 |
tccggatcccgaccaccacaaaaagaataatatatcacg |
250 |
Q |
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| T |
41987570 |
tccggatcccgaccaccacaaaaagaacaatatatcacg |
41987532 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 38309633 - 38309597
Alignment:
| Q |
177 |
ttagttaatatagataatgcataatatatacaagatc |
213 |
Q |
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| T |
38309633 |
ttagttgatatagataatgcataatatatgcaagatc |
38309597 |
T |
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