View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18017_low_2 (Length: 1200)
Name: NF18017_low_2
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18017_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 1170; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 1170; E-Value: 0
Query Start/End: Original strand, 10 - 1187
Target Start/End: Complemental strand, 23853305 - 23852128
Alignment:
| Q |
10 |
acatcatcatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggttgtgtcacggttgtgt |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23853305 |
acatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggttgtgtcacggttgtgt |
23853206 |
T |
|
| Q |
110 |
tgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23853205 |
tgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatat |
23853106 |
T |
|
| Q |
210 |
ttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23853105 |
ttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattat |
23853006 |
T |
|
| Q |
310 |
ttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatcc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23853005 |
ttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatcc |
23852906 |
T |
|
| Q |
410 |
atgttacccacaaaaaggagaacaatttgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgctcattcacagttcaag |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852905 |
atgttacccacaaaaaggagaacaatttgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgctcattcacagttcaag |
23852806 |
T |
|
| Q |
510 |
tatcttagttatttggaccttagtggaaacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatg |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852805 |
tatcttagttatttggaccttagtggaaacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatg |
23852706 |
T |
|
| Q |
610 |
actcccatttgagtggtaagatcccaaataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgt |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852705 |
actcccatttgagtggtaagatcccaaataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgt |
23852606 |
T |
|
| Q |
710 |
cagttgggtttcaaaactttcattgctccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattcct |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852605 |
cagttgggtttcaaaactttcattgctccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattcct |
23852506 |
T |
|
| Q |
810 |
tctttgttagaattagacttgatgaactgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaagacac |
909 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852505 |
tctttgttagaattagacttgatgaactgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaagacac |
23852406 |
T |
|
| Q |
910 |
tcaatcttgcagataatggacttgatggtccagatctgaatgtttttagaaacatgacttccgttgaagttattgtcctttctaacaatagtcttagttc |
1009 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23852405 |
tcaatcttgcagataatggacttgatggtccagatctgaatgtttttagaaacatgacttccgttaaagttattgtcctttctaacaatagtcttagttc |
23852306 |
T |
|
| Q |
1010 |
agttccattttggttgagtaattgtgccaaacttcaacatctttatcttcgaagaaatgctcttaatggctcacttccattagctcttcgaaatttgact |
1109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852305 |
agttccattttggttgagtaattgtgccaaacttcaacatctttatcttcgaagaaatgctcttaatggctcacttccattagctcttcgaaatttgact |
23852206 |
T |
|
| Q |
1110 |
tctttggaattgcttaacctttctcaaaacaaaattgaatctgttccacagtggttaggagggttaaagagccttttg |
1187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852205 |
tctttggaattgcttaacctttctcaaaacaaaattgaatctgttccacagtggttaggagggttaaagagccttttg |
23852128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 74 - 1187
Target Start/End: Complemental strand, 23752535 - 23751427
Alignment:
| Q |
74 |
cctatttaagttgtgttggttgtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagt |
173 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||||| ||||||| |||| |||| ||||||| || ||||||| ||||||| |||||||||||||| |
|
|
| T |
23752535 |
cctatttaagttgtgttggttgagtccccgttgtg-----cccacccaacttacagcgttgcttcattcacttccctcaaatatgcatagaaaccaaagt |
23752441 |
T |
|
| Q |
174 |
tttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctc |
273 |
Q |
| |
|
| ||||||| |||||||| |||||||| |||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||| | |
|
|
| T |
23752440 |
tatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcatttggttgcatagaacaagagaggcaagcac |
23752341 |
T |
|
| Q |
274 |
ttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaacat |
373 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23752340 |
ttcttgaactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatgaatgttgtaaatggaaaggtataagttgcagcaacat |
23752241 |
T |
|
| Q |
374 |
cacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaaaaggagaacaatttgattcaaactgtccctactcaaaatctaagcttgaa |
473 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |||||||||| | || || ||| | | ||||||||| | | ||||| ||||||| || |
|
|
| T |
23752240 |
tacaggtcatgttgttaaaattgaccttaggaatccatgctacccacaaagaagaaaaaaatatcaatcaaactgttcattaacaaaaaataagcttaaa |
23752141 |
T |
|
| Q |
474 |
gctcagtatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtggaaacaatttcaattcaagtccaataccaaagtttatcc |
573 |
Q |
| |
|
|||| | |||||| | ||| |||| | || || |||||||| |||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
23752140 |
gctccagaaatccatacatctctttcaaattttaaaaatcttagtaatttagaccttagtggaaacaatttaaattcaagtccaataccaacatttatcc |
23752041 |
T |
|
| Q |
574 |
attctatgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaaataaccttggaaacctcacaaaattgtcctttcttga |
673 |
Q |
| |
|
||| |||||||||||| |||| |||||| ||| ||| ||| |||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
23752040 |
atttaatgaatcagttaaaattcctttctatctctgattccaatttgagtggaataatcccaaataaccttagaaacctcacaaaattgaactttcttga |
23751941 |
T |
|
| Q |
674 |
tctcagtttcaatacttatttacactctgatgatgtcagttgggtttcaaaactttcattgctccaaaacctttacctgagtgatgtttttcttgggagg |
773 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
23751940 |
tctcagtttaaattcttatttacactctgatgatgtaaattgggtttcaaaactttcattgctccaaaacctttaaatgagtgatgtttttcttgggaag |
23751841 |
T |
|
| Q |
774 |
gcacaaaatttgttcttcgtacttaacatgattccttctttgttagaattagacttgatgaactgcagcataaccaagatgcacagtagtgatcataaac |
873 |
Q |
| |
|
||||||||||| ||| ||||||| |||| ||||||||||| |||||||||| |||| |||||| ||||||||||||||||||||| |||||| ||| |
|
|
| T |
23751840 |
gcacaaaatttattcaaggtacttaccatgcttccttctttgatagaattagaattgaagaactgaagcataaccaagatgcacagtcatgatcaacaac |
23751741 |
T |
|
| Q |
874 |
tagttagttacacaaacttttctagtattaagacactcaatcttgcagataatggacttgatggtccagatctgaatgtttttagaaacatgacttccgt |
973 |
Q |
| |
|
| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
23751740 |
ttgttagttacacaaatttttctagtattaaatcactcaatcttgcagataatagacttgatggtccagatctgaatgcttttagaaacatgacttcaat |
23751641 |
T |
|
| Q |
974 |
tgaagttattgtcctttctaacaatagtcttagttcagttccattttggttgagtaattgtgccaaacttcaacatctttatcttcgaagaaatgctctt |
1073 |
Q |
| |
|
|||| |||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |||| ||||||||| |
|
|
| T |
23751640 |
tgaaaatattaacctttctaacaatagtattagttcagttccaatttggttgagtaattgtgccaaacttgactatctttatcttggaagcaatgctctt |
23751541 |
T |
|
| Q |
1074 |
aatggctcacttccattagctcttcgaaatttgacttctttggaattgcttaacctttctcaaaacaaaattgaatctgttccacagtggttaggagggt |
1173 |
Q |
| |
|
|| || ||| |||||| ||||||| ||||||||||||| ||| ||| ||| ||||||| |||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
23751540 |
aaaggttcagttccataagctcttagaaatttgacttccttgaaatagctagacctttcccaaaacaaaattgaatctgttccaaaatggttagatgggt |
23751441 |
T |
|
| Q |
1174 |
taaagagccttttg |
1187 |
Q |
| |
|
|| |||| |||||| |
|
|
| T |
23751440 |
tagagagtcttttg |
23751427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 144 - 1187
Target Start/End: Complemental strand, 22619863 - 22618820
Alignment:
| Q |
144 |
cttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcat |
243 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||| |||||||| |||||||| |||| |||||||||||||||||| || |||||||||||| |
|
|
| T |
22619863 |
cttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcat |
22619764 |
T |
|
| Q |
244 |
ttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatgactgttg |
343 |
Q |
| |
|
|||||||| | |||||||||||| |||||||| | | | |||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
22619763 |
ttggttgcttagaacaagagaggcaagctcttttagcactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatgaatgttg |
22619664 |
T |
|
| Q |
344 |
taaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaaaaggagaacaatttgattca |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||| | || || ||| | | ||| |
|
|
| T |
22619663 |
taaatggaaaggtataagttgcagcaacattacaggtcatgttataaaaattgaccttaggaatccatgctacccacaaagaagaaaaaaatatcaatca |
22619564 |
T |
|
| Q |
444 |
aactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtggaaacaatt |
543 |
Q |
| |
|
|||||| | | ||||| ||||||| |||||| | |||||| | ||| |||| | || || |||||||| |||| ||||||||||||||||||| |
|
|
| T |
22619563 |
aactgttcattaacaaaaaataagcttaaagctccagaaatccatacatctctttcaaattttaaaaatcttagtaatttagaccttagtggaaacaatt |
22619464 |
T |
|
| Q |
544 |
tcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaaataacct |
643 |
Q |
| |
|
| ||||||||||||||||||| |||||||||| |||||||||||| |||| |||||| ||| ||| ||| |||||||||| | |||||||||||||| |
|
|
| T |
22619463 |
taaattcaagtccaataccaacatttatccatttaatgaatcagttaaaattcctttctatctctgattccaatttgagtggaataatcccaaataacct |
22619364 |
T |
|
| Q |
644 |
tggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgtcagttgggtttcaaaactttcattgctccaaaac |
743 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
22619363 |
tagaaacctcacaaaattgaactttcttgatctcagtttaaattcttatttacactctgatgatgtaaattgggtttcaaaactttcattgctccaaaac |
22619264 |
T |
|
| Q |
744 |
ctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattccttctttgttagaattagacttgatgaactgcagca |
843 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||| ||| ||||||| |||| ||||||||||| |||||||||| |||| |||||| |||| |
|
|
| T |
22619263 |
ctttacttgagtgatgtttttcttgggaaggcacaaaatttattcaaggtacttaccatgcttccttctttgatagaattagaattgaagaactgaagca |
22619164 |
T |
|
| Q |
844 |
taaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaagacactcaatcttgcagataatggacttgatggtccaga |
943 |
Q |
| |
|
||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22619163 |
taaccaagatgcacagtcatgatcaacaacttgttagttacacaaatttttctagtattaaatcactcaatcttgcagataatagacttgatggtccaga |
22619064 |
T |
|
| Q |
944 |
tctgaatgtttttagaaacatgacttccgttgaagttattgtcctttctaacaatagtcttagttcagttccattttggttgagtaattgtgccaaactt |
1043 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22619063 |
tctgaatgcttttagaaacatgacttcaattgaaaatattaacctttctaacaatagtattagttcagttccaatttggttgagtaattgtgccaaactt |
22618964 |
T |
|
| Q |
1044 |
caacatctttatcttcgaagaaatgctcttaatggctcacttccattagctcttcgaaatttgacttctttggaattgcttaacctttctcaaaacaaaa |
1143 |
Q |
| |
|
| ||||||||||| |||| ||||||||||| || ||| |||||| ||||||| ||||||||||||| ||| ||| ||| ||||||| |||||||||| |
|
|
| T |
22618963 |
gactatctttatcttggaagcaatgctcttaaaggttcagttccataagctcttagaaatttgacttccttgaaatagctagacctttcccaaaacaaaa |
22618864 |
T |
|
| Q |
1144 |
ttgaatctgttccacagtggttaggagggttaaagagccttttg |
1187 |
Q |
| |
|
|||||||||||||| | ||||||| |||||| |||| |||||| |
|
|
| T |
22618863 |
ttgaatctgttccaaaatggttagatgggttagagagtcttttg |
22618820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 879 - 1180
Target Start/End: Original strand, 20573044 - 20573345
Alignment:
| Q |
879 |
agttacacaaacttttctagtattaagacactcaatcttgcagataatggacttgatggtccagatctgaatgtttttagaaacatgacttccgttgaag |
978 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||||| |
|
|
| T |
20573044 |
agttacacaaatttttctagcattaagtcactcaatcttgcagataatggacttaatggtccaaatctgaatgcttttagaaacatgacttcaattgaaa |
20573143 |
T |
|
| Q |
979 |
ttattgtcctttctaacaatagtcttagttcagttccattttggttgagtaattgtgccaaacttcaacatctttatcttcgaagaaatgctcttaatgg |
1078 |
Q |
| |
|
||||| ||||||||||||||| | |||||||||||||||||||| |||||||||| ||||| |||||| ||| |||| |||||||| ||||| |
|
|
| T |
20573144 |
ctattgacctttctaacaatagaatcagttcagttccattttggttaggtaattgtgcaaaactgggttatctttctctcggaagcaatgctctcaatgg |
20573243 |
T |
|
| Q |
1079 |
ctcacttccattagctcttcgaaatttgacttctttggaattgcttaacctttctcaaaacaaaattgaatctgttccacagtggttaggagggttaaag |
1178 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||| ||||||| |||||||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
20573244 |
ctcacttccattagctcttcgaaatttgacttccttgacgttgcttgacctttcccaaaacaacattgaatctgttccattatggttaggtgggttaaag |
20573343 |
T |
|
| Q |
1179 |
ag |
1180 |
Q |
| |
|
|| |
|
|
| T |
20573344 |
ag |
20573345 |
T |
|
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