View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18017_low_20 (Length: 249)
Name: NF18017_low_20
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18017_low_20 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 13551858 - 13551624
Alignment:
| Q |
15 |
attaacaaagtcaaaataataacctcaatacactgccattgatctatactacatttttcggacatctcatcccatctttcaactgatataggacaatagg |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13551858 |
attaacaaagtcaaaatataaacctcaatacactgccattgatctatactacatttttcggacatctcatcccatctttcaactgatataggacaataga |
13551759 |
T |
|
| Q |
115 |
ctgactttttagcgatttggcctaagaacctcacaagtaagtttgtaccattatcgtctccttgcccccttttgttgagttccacaataannnnnnnngt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || |
|
|
| T |
13551758 |
ctgactttttagcgatttggcctaagaacctcacaagtaagtttgtaccattatcgtctccttgtccccttttgttgagttccacagtaattttttttgt |
13551659 |
T |
|
| Q |
215 |
cttctccaaatgccaaacctcagttgctaccattt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
13551658 |
cttctccaaatgccaaacctcagttgctaccattt |
13551624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 11228335 - 11228102
Alignment:
| Q |
15 |
attaacaaagtcaaaataataacctcaatacactgccattgatctatactacatttttcggacatctcatcccatctttcaactgatataggacaatagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11228335 |
attaacaaagtcaaaataataacctcgatacactgccattgatctatactacatttttcggacatctcatcccacctttcaactgatataggacaatagg |
11228236 |
T |
|
| Q |
115 |
ctgactttttagcgatttggcctaagaacctcacaagtaagtttgtaccattatcgtctccttgcccccttttgttgagttccacaataannnnnnnngt |
214 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| || |
|
|
| T |
11228235 |
ctgattttttagcaatttggcctaagaacctcacaagtaagttagtaccattatcgtctccttgtccccttttgttgagccccacaataa-tttttttgt |
11228137 |
T |
|
| Q |
215 |
cttctccaaatgccaaacctcagttgctaccattt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
11228136 |
cttctccaaatgccaaacctcagttgctaccattt |
11228102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University