View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18017_low_21 (Length: 235)

Name: NF18017_low_21
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18017_low_21
NF18017_low_21
[»] chr1 (3 HSPs)
chr1 (1-221)||(31432932-31433155)
chr1 (3-132)||(33377783-33377912)
chr1 (6-132)||(31439534-31439660)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31432932 - 31433155
Alignment:
Q  1 atgatgtgctcgtcgctttatttagcagtaaagttaagctactacaatttgaagaaattgaaaccaaatagagaagcaaagccagaaaaatagaacttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31432932 atgatgtgctcgtcgctttatttagcagtaaagttaagctactgcaatttaaagaaattgaaaccaaatagagaagcaaagccagaaaaatagaacttaa 31433031  T
Q  101 ttaccacaa---gttaatcttacttaaaacctttccacaagttaaccacaagtaactcagacttcagaggctgtaggagtttctgcgtcatagatggaaa 197  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31433032 ttaccacaacaagttaatcttacttaaaacctttccacaagttaaccacaagtaactcagacttcagaggctgtaggagtttctgcgtcatagatggaaa 31433131  T
Q  198 ttgaaattttgtccaagttgaagt 221  Q
    |||||||| |||||||||||||||    
T  31433132 ttgaaattctgtccaagttgaagt 31433155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 33377912 - 33377783
Alignment:
Q  3 gatgtgctcgtcgctttatttagcagtaaagttaagctactacaatttgaagaaattgaaaccaaatagagaagcaaagccagaaaaatagaacttaatt 102  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||| |||||||||||||||| || |||||||| |||| ||||||| || ||||||||     
T  33377912 gatgtgcttgtcgctttctttagcagtaaagttaagctactgcaaattgaagaaattgaaactaagtagagaagaaaagtcagaaaagtacaacttaata 33377813  T
Q  103 accacaagttaatcttacttaaaacctttc 132  Q
     ||||||||||||| ||||| |||||||||    
T  33377812 tccacaagttaatcctacttgaaacctttc 33377783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 31439534 - 31439660
Alignment:
Q  6 gtgctcgtcgctttatttagcagtaaagttaagctactacaatttgaagaaattgaaaccaaatagagaagcaaagccagaaaaatagaacttaattacc 105  Q
    ||||| |||||||| |||| |||||||||||| ||||| ||| ||||||||| ||||||||| ||||||||||||| ||||||| || ||||||||  ||    
T  31439534 gtgcttgtcgctttctttaacagtaaagttaaactactgcaaattgaagaaactgaaaccaagtagagaagcaaagtcagaaaagtacaacttaatatcc 31439633  T
Q  106 acaagttaatcttacttaaaacctttc 132  Q
    ||||||||||| ||||| |||||||||    
T  31439634 acaagttaatcctacttgaaacctttc 31439660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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