View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18017_low_22 (Length: 235)
Name: NF18017_low_22
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18017_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 41987523 - 41987286
Alignment:
| Q |
6 |
aaaagataagtatgagaaacgtatagaaaacacatcaaaaagtgttaaagtataaacagtagtattgtacaattctatatacgtattttgtactaatatg |
105 |
Q |
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| T |
41987523 |
aaaagataagtatgagaaacgtatagaaaacacatcaaaaaatgttaaagtataaacagtagtattgtacaattctatatacgtattttgtactaatatg |
41987424 |
T |
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| Q |
106 |
cataattttgtgaccacaaaattcaagt--aattattacacca------acgcagcttctacacgtcctaccgttattgtctatgtacttctgcaaacag |
197 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41987423 |
cataattttgtgaccacaaaattcaagtaaaattattacaccaacgcagacgcagcttctacacgtcctaccgttattgtctatgtacttctgcaaacag |
41987324 |
T |
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| Q |
198 |
aattttcagtcacaagaaaagaataactaactccgtct |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
41987323 |
aattttcagtcacaagaaaagaataactaactccgtct |
41987286 |
T |
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