View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18017_low_23 (Length: 223)
Name: NF18017_low_23
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18017_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 11972044 - 11972249
Alignment:
| Q |
1 |
tggtaaccaatgtagagttataaacacttatgttataaacgctcaattaaattgtttatccaataatcaataaaatttgagtattaatcaaaaggaagac |
100 |
Q |
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| T |
11972044 |
tggtaaccaatgtagagttataaacacttatgttataaacgctcaattaaactgtttatccaataatcaataaaatttgagtactaatcaaaaggaagac |
11972143 |
T |
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| Q |
101 |
acttcagtccggtaaaagaacatgccagaaggactaccattgggaattagtgctagcttcacaacactaacagcaccttcttcaaccgttaacaaaccgt |
200 |
Q |
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| T |
11972144 |
acttcagtccggtaaaagaacatgccagaagtaccaccatttggaattagtgctagcttcacaacactaacagcaccttcttcaaccgttaacaaaccgt |
11972243 |
T |
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| Q |
201 |
tattgg |
206 |
Q |
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|||||| |
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| T |
11972244 |
tattgg |
11972249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 11982566 - 11982670
Alignment:
| Q |
80 |
agtattaatcaaaaggaagacacttcagtccggtaaaagaacatgccagaaggactaccattgggaattagtgctagcttcacaacactaacagcacctt |
179 |
Q |
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| T |
11982566 |
agtactaatcaaaaggcagagacttcagtccggttatagaatcggccagatggacttccattgggaagcaatgctagcttgacaacactagcagcacctt |
11982665 |
T |
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| Q |
180 |
cttca |
184 |
Q |
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||||| |
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| T |
11982666 |
cttca |
11982670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 11977929 - 11978036
Alignment:
| Q |
80 |
agtattaatcaaaaggaagaca---cttcagtccggtaaaagaacatgccagaaggactaccattgggaattagtgctagcttcacaacactaacagcac |
176 |
Q |
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|||| ||||||||||||||||| ||||||||| | | |||| |||||| ||||| |||||||||| | ||||||||||||||||||| |||||| |
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| T |
11977929 |
agtactaatcaaaaggaagacatgacttcagtcctatgatagaattggccagatggacttccattgggaagcaatgctagcttcacaacactagcagcac |
11978028 |
T |
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| Q |
177 |
cttcttca |
184 |
Q |
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|||||||| |
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| T |
11978029 |
cttcttca |
11978036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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