View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18017_low_24 (Length: 212)

Name: NF18017_low_24
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18017_low_24
NF18017_low_24
[»] chr2 (4 HSPs)
chr2 (28-133)||(15465601-15465706)
chr2 (1-35)||(41587227-41587261)
chr2 (1-29)||(8710868-8710896)
chr2 (1-29)||(15604337-15604365)
[»] chr4 (6 HSPs)
chr4 (1-36)||(27069310-27069345)
chr4 (1-36)||(27149395-27149430)
chr4 (1-36)||(52573628-52573663)
chr4 (1-29)||(3032580-3032608)
chr4 (1-29)||(54858558-54858586)
chr4 (1-29)||(54858960-54858988)
[»] chr6 (1 HSPs)
chr6 (1-36)||(22503174-22503209)
[»] chr7 (3 HSPs)
chr7 (1-30)||(23058829-23058858)
chr7 (4-32)||(27138344-27138372)
chr7 (1-29)||(32934748-32934776)
[»] chr3 (6 HSPs)
chr3 (1-38)||(32306413-32306450)
chr3 (1-30)||(40788820-40788849)
chr3 (1-30)||(47551490-47551519)
chr3 (1-29)||(10294959-10294987)
chr3 (1-29)||(37778673-37778701)
chr3 (1-29)||(52032539-52032567)
[»] chr1 (3 HSPs)
chr1 (1-38)||(25885393-25885430)
chr1 (1-29)||(8898515-8898543)
chr1 (1-29)||(31058457-31058485)
[»] chr5 (1 HSPs)
chr5 (1-29)||(33871738-33871766)


Alignment Details
Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 15465601 - 15465706
Alignment:
Q  28 ttatttttaaatattagtgagacttcaaattgatttaataaaattatttctaaaaattattaaaggcatctttacagtaattaatttgtcaggggtaatg 127  Q
    |||||| ||||||||| |||| |||| |||| |||||| ||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||    
T  15465601 ttatttctaaatattattgaggcttctaattcatttaacaaaattatttctaaaaattattagaggaaactttacagaaattaatttgtcaggggtaatg 15465700  T
Q  128 agattt 133  Q
    ||||||    
T  15465701 agattt 15465706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41587261 - 41587227
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccttattttt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  41587261 tgcaaggacgaaacacatcattaagccttcttttt 41587227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 8710868 - 8710896
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  8710868 tgcaaggacgaaacacatcattaagcctt 8710896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 15604365 - 15604337
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  15604365 tgcaaggacgaaacacatcattaagcctt 15604337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27069310 - 27069345
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccttattttta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  27069310 tgcaaggacgaaacacatcattaagccttattttta 27069345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27149395 - 27149430
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccttattttta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  27149395 tgcaaggacgaaacacatcattaagccttattttta 27149430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 52573628 - 52573663
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccttattttta 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  52573628 tgcaaggacgaaacacatcattaagcctttttttta 52573663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 3032608 - 3032580
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  3032608 tgcaaggacgaaacacatcattaagcctt 3032580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 54858586 - 54858558
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  54858586 tgcaaggacgaaacacatcattaagcctt 54858558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 54858960 - 54858988
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  54858960 tgcaaggacgaaacacatcattaagcctt 54858988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22503174 - 22503209
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccttattttta 36  Q
    |||||||||||||||||| |||||||||||||||||    
T  22503174 tgcaaggacgaaacacattattaagccttattttta 22503209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 23058829 - 23058858
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctta 30  Q
    ||||||||||||||||||||||||||||||    
T  23058829 tgcaaggacgaaacacatcattaagcctta 23058858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 27138344 - 27138372
Alignment:
Q  4 aaggacgaaacacatcattaagccttatt 32  Q
    |||||||||||||||||||||||||||||    
T  27138344 aaggacgaaacacatcattaagccttatt 27138372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 32934748 - 32934776
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  32934748 tgcaaggacgaaacacatcattaagcctt 32934776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32306450 - 32306413
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccttatttttaaa 38  Q
    |||||||||||||||||||||||||||||  |||||||    
T  32306450 tgcaaggacgaaacacatcattaagcctttattttaaa 32306413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 40788820 - 40788849
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctta 30  Q
    ||||||||||||||||||||||||||||||    
T  40788820 tgcaaggacgaaacacatcattaagcctta 40788849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 47551519 - 47551490
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctta 30  Q
    ||||||||||||||||||||||||||||||    
T  47551519 tgcaaggacgaaacacatcattaagcctta 47551490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10294959 - 10294987
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  10294959 tgcaaggacgaaacacatcattaagcctt 10294987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37778673 - 37778701
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  37778673 tgcaaggacgaaacacatcattaagcctt 37778701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 52032539 - 52032567
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  52032539 tgcaaggacgaaacacatcattaagcctt 52032567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25885393 - 25885430
Alignment:
Q  1 tgcaaggacgaaacacatcattaagccttatttttaaa 38  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  25885393 tgcaaggacgaaacacatcattaagccttttctttaaa 25885430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8898543 - 8898515
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  8898543 tgcaaggacgaaacacatcattaagcctt 8898515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 31058457 - 31058485
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  31058457 tgcaaggacgaaacacatcattaagcctt 31058485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33871738 - 33871766
Alignment:
Q  1 tgcaaggacgaaacacatcattaagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  33871738 tgcaaggacgaaacacatcattaagcctt 33871766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University