View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18017_low_4 (Length: 627)
Name: NF18017_low_4
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18017_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 13 - 610
Target Start/End: Original strand, 46454536 - 46455133
Alignment:
| Q |
13 |
aagaaaatgaggatttacccgaaaactatgtagatacctataaaacagatttaaaatttcctaatcctaatctcaaaagtgcttacatagcactacaagc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46454536 |
aagaaaatgaggatttacccgaaaactatgtagatacctataaaacagatttaaaatttcctaatcctaatctcaaaagtgcttacatagcactacaagc |
46454635 |
T |
|
| Q |
113 |
atggaaaaaagcaatttattcagacccaaccaacttcacatcaaattgggagggccctaatgtttgttcttacaatggaattttttgtgcagcttctctt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46454636 |
atggaaaaaagcaatttattcagacccaaccaacttcacatcaaattgggagggccctaatgtttgttcttacaatggaattttttgtgcagcttctctt |
46454735 |
T |
|
| Q |
213 |
aatgattcaaaaattcaagttgtagctgggattgatcttaatcaagcagacattgcaggatacattcctgctgagtttggtttgttagctgatattgctc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46454736 |
aatgattcaaaaattcaagttgtagctgggattgatcttaatcaagcagacattgcaggatacattcctgctgagtttggtttgttagctgatattgctc |
46454835 |
T |
|
| Q |
313 |
ttttgcatataaactcaaataggttttgtggggttctcccaaaaagtttttcaaagttaaagcttttgcacgagttggatattagtaacaaccgatttgt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46454836 |
ttttgcatataaactcaaataggttttgtggggttctcccaaaaagtttttcaaagttaaagcttttgcacgagttggatattagtaacaaccgttttgt |
46454935 |
T |
|
| Q |
413 |
tggaaaattcccttgtcatgttctttcaattccagatataaaattcattgatatcaggttcaatgaatttgaaggagaaattcctccagagctttttaac |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46454936 |
tggaaaattcccttgtcatgttctttcaattccagatataaaattcattgatatcaggttcaatgaatttgaaggagaaattcctccagagctttttaac |
46455035 |
T |
|
| Q |
513 |
aaaacactcgacgctatatttataaacaacaacagattcacatcaacaataccagaaaatatgggaaattctccagcatcagtcattgtttttgccaa |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46455036 |
aaaacactcgacgctatatttataaacaacaacagattcacatcaacaataccagaaaatatgggaaattctccagcatcagtcattgtttttgccaa |
46455133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University