View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18017_low_5 (Length: 541)
Name: NF18017_low_5
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18017_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 525
Target Start/End: Complemental strand, 41359142 - 41358639
Alignment:
| Q |
13 |
gagatgaacatggctcaacaggtactcttttgactattatattcatatgttagtttttggaattttcctcatgaattttcattgtattcatgnnnnnnnn |
112 |
Q |
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| T |
41359142 |
gagaagaacatggctcaacaggtactcttttgactattatattcatatattagtttttggaattttc-------------attgtattcatgtttttttt |
41359056 |
T |
|
| Q |
113 |
nn-atacaatggatttgatgttagaatgaggggtggccactgggtttacagccactgcatgcaaggatggagattgttagtaattggaacaactctggat |
211 |
Q |
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| T |
41359055 |
tttatacaatggatttgatgttagaatgaggggtggccactgggtttacagccactgcatgcaaggatggagattgttagtaatgggaacaactctggat |
41358956 |
T |
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| Q |
212 |
caatgtcatttaacaccttgctcagtg---attctccttctacaaattcttcatctgatttagacacacaggttagtaaaactaaaattaacaaatatta |
308 |
Q |
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| T |
41358955 |
caatgtcatttaacaccttgcttagtggttcttcttcttctacaaattcttcatctgatttagacacacaggttagtaaaactaaaattaacaaatatta |
41358856 |
T |
|
| Q |
309 |
taggtactctgttggattatactactctatatatatttgtttnnnnnnnnnttgatacggaactcaaaaaatttctcaagtcatggaactcacatttaat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
41358855 |
taggtactctgttggattatactactctatatatatttgttttaaaaaaaattgatacggaactcaaaaaatttctcaagtcatggaaatcgcatttaat |
41358756 |
T |
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| Q |
409 |
tcataagaaatatacaagctttaggaaactatttatgaatgaactcggatattagatagagaggtaatttatatactcaatatcgaaagttttggttaaa |
508 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
41358755 |
tcataagaaatatacatgctttaggaaactatttatgaatgaactcggatattagatagagaggtaatctatatactcaatatcgaaggttttggttaaa |
41358656 |
T |
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| Q |
509 |
gatgtggtgtatcgatg |
525 |
Q |
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| T |
41358655 |
gatgtggtgtatcgatg |
41358639 |
T |
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