View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18017_low_6 (Length: 500)
Name: NF18017_low_6
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18017_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Original strand, 32842935 - 32843407
Alignment:
| Q |
17 |
caaaggcgacaaggaaagatatttaaagctagagagcttgagagaaaagtattcttagaaagtaacatatttgattaaaagatcatgaattgaattgata |
116 |
Q |
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| T |
32842935 |
caaaggcgacaaggaaagatatttaaagctagagagcttgagagaaaagtattcttagaaagtaacatatttgattaaaagatcatgaattgaattgata |
32843034 |
T |
|
| Q |
117 |
caaaggtgtttatagagatgagaaacaacaaacttaaacataacaactaattgtaacagaataacaacc----------aacagctgcatctctatttat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32843035 |
caaaggtgtttatagagatgagaaacaacaaacttaaacataacta--aattgtaacagaataacaaccaacactaaccaacagctgcatctctatttat |
32843132 |
T |
|
| Q |
207 |
cgtcatactaaggcaatagaaagaagaagaaggaaagataaacaaaatttaaacagaatagcacagatattctcctctcgctcaccacattgggcaatgc |
306 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32843133 |
cgtcatactaaggcaatagaaaaaagaagaaggaaagataaacaaaatctaaacagaatagcacagatattctcctctcgctcaccacattgggcaatgc |
32843232 |
T |
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| Q |
307 |
gaagcaagcactgccgaatcacaggatattgatccaatccccatttgtcactagagaacttgaagaaatcccacagtgccaaacatgatatcaacccaac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32843233 |
gaagcaagcactgccgaatcacaggatattgatccaatccccatttgtcactagagaacttgaagaaatcccacagggccaaacatgatatcaacccaac |
32843332 |
T |
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| Q |
407 |
aagagcaagtggcatcttatacctgcaaggatcaaggacaaaacacagttttaccaaacaacataagggcagaac |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32843333 |
aagagcaagtggcatcttatacctgcaaggatcaaggacaaaacacagttttaccaaacaacataagggcagaac |
32843407 |
T |
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