View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18017_low_7 (Length: 436)
Name: NF18017_low_7
Description: NF18017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18017_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 226 - 429
Target Start/End: Original strand, 27496610 - 27496813
Alignment:
| Q |
226 |
acaatcaaggacattgattaaacaataattaagttcttttctctaaaataaatctcttccagtttgaagaaaaacctgtgtgggtgattcataggccctt |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27496610 |
acaatcaaggacattgattaaacaataattaagttcttttctctaaaataaatctcttccactttgaagaaaaacctgtgtgggtgattcataggccctt |
27496709 |
T |
|
| Q |
326 |
gtctcacactagaccccataaaatagaatcaagttaacattagttttcaactatgcaattatagtctttaatttcaggaatttaatctgctggcagaata |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
27496710 |
gtctcacactagaccccataaaatagaatcaagttaacaatagttttcaactatgcaattatagtctttaatttcaggaacttaatctgctggcagtata |
27496809 |
T |
|
| Q |
426 |
atct |
429 |
Q |
| |
|
|||| |
|
|
| T |
27496810 |
atct |
27496813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 17439518 - 17439309
Alignment:
| Q |
16 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17439518 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg |
17439419 |
T |
|
| Q |
116 |
ttgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17439418 |
ctgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttg-atgtagaatgaaattatcttcaagtttctgaaataacttt |
17439320 |
T |
|
| Q |
216 |
tagttcttaca |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
17439319 |
tagttcttaca |
17439309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 17443820 - 17443611
Alignment:
| Q |
16 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17443820 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg |
17443721 |
T |
|
| Q |
116 |
ttgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17443720 |
ctgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttg-atgtagaatgaaattatcttcaagtttctgaaataacttt |
17443622 |
T |
|
| Q |
216 |
tagttcttaca |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
17443621 |
tagttcttaca |
17443611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 3058381 - 3058590
Alignment:
| Q |
16 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3058381 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg |
3058480 |
T |
|
| Q |
116 |
ttgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3058481 |
ctgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttg-atgcagaatgaaattatcttcaagtttctgaaataacttt |
3058579 |
T |
|
| Q |
216 |
tagttcttaca |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
3058580 |
tagttcttaca |
3058590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 3062682 - 3062891
Alignment:
| Q |
16 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3062682 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg |
3062781 |
T |
|
| Q |
116 |
ttgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3062782 |
ctgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttg-atgcagaatgaaattatcttcaagtttctgaaataacttt |
3062880 |
T |
|
| Q |
216 |
tagttcttaca |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
3062881 |
tagttcttaca |
3062891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 26083015 - 26082805
Alignment:
| Q |
16 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26083015 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg |
26082916 |
T |
|
| Q |
116 |
ttgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttt |
215 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26082915 |
ctgtcttgctgttcactttttctgttttttctatatattgtatcagaaactttattttg-atgtagaatgaaattatcttcaagtttctgaaataacttt |
26082817 |
T |
|
| Q |
216 |
tagttcttacac |
227 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
26082816 |
tagttcatacac |
26082805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 4877323 - 4877532
Alignment:
| Q |
16 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4877323 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg |
4877422 |
T |
|
| Q |
116 |
ttgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4877423 |
ctgtcctgctgttcactttttctgttttttctacatattgtatcagaaactttattttg-atgtagaatgaaattatcttcaagtttctgaaataacttt |
4877521 |
T |
|
| Q |
216 |
tagttcttaca |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
4877522 |
tagttcttaca |
4877532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 4873023 - 4873232
Alignment:
| Q |
16 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4873023 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg |
4873122 |
T |
|
| Q |
116 |
ttgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4873123 |
ctgtcctgctgttcactttttctgttttttctaaatattgtatcagaaactttattttg-atgtagaatgaaattatcttcaagtttctgaaataacttt |
4873221 |
T |
|
| Q |
216 |
tagttcttaca |
226 |
Q |
| |
|
| ||||||||| |
|
|
| T |
4873222 |
ttgttcttaca |
4873232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 30189943 - 30190153
Alignment:
| Q |
16 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30189943 |
ttaatgtagtagttgaagttacctctgcaaaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg |
30190042 |
T |
|
| Q |
116 |
ttgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataac-tt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||| |||||||||||| || || |
|
|
| T |
30190043 |
ctgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttg-aagtagaataaaatcatcttccagtttctgaaattacttt |
30190141 |
T |
|
| Q |
215 |
ttagttcttaca |
226 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30190142 |
ttagttcttaca |
30190153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 6668078 - 6667869
Alignment:
| Q |
16 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6668078 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg |
6667979 |
T |
|
| Q |
116 |
ttgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| |||||||||| |
|
|
| T |
6667978 |
ctgtcctgctgttcactttttctgttttttctatatattgtatcagaaactttattttg-atgtagaatgaaattatcttaaagtttcttaaataacttt |
6667880 |
T |
|
| Q |
216 |
tagttcttaca |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
6667879 |
tagttcttaca |
6667869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 28010361 - 28010300
Alignment:
| Q |
16 |
ttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgttt |
77 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
28010361 |
ttaatatagttgttgaagttacctctgcataagtatggtgacccatacttgttgaagtgttt |
28010300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 28010295 - 28010232
Alignment:
| Q |
157 |
atcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttttagttc |
221 |
Q |
| |
|
||||||||||| ||||||| || | ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28010295 |
atcagaaacttcattttgatgaa-gtatgaaattatcttcaagtttctgaaatttcttttagttc |
28010232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 16174244 - 16174314
Alignment:
| Q |
131 |
ctttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagttt |
202 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| | |||||| || ||||||| |||||||| |||||| |
|
|
| T |
16174244 |
cttttcctgttttttctgtatattgtatcagaaacatcattttg-aagtagaatgatattatcttgaagttt |
16174314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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