View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_high_1 (Length: 699)
Name: NF18018_high_1
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_high_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 1 - 699
Target Start/End: Original strand, 53043899 - 53044593
Alignment:
| Q |
1 |
cggtattgttgagcatttgttaggagtgttaatgattattgggtttctgctggttaaaaacaggaactagtcagtagcaccaatcgaccaaaatcccaga |
100 |
Q |
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| T |
53043899 |
cggtattgttgagcatttgttaggagtgttaatgattattgggtttctgctggttaaaaacaggaactagtcagtagcaccaatcgaccaaaatcccaga |
53043998 |
T |
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| Q |
101 |
taatctgcgtaatggaaggatttgaaacagtgatgttcaggtccaaatttgattcttggcctcagacaactaatgcagcaatgcctgaagatggtcgtgg |
200 |
Q |
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| T |
53043999 |
taatccgcgtaatggaaggatttgaaacagtgatgttcaggtccaaatttgattcttggcctcagacaactaatgcagcaatgcctgaagatggccgtgg |
53044098 |
T |
|
| Q |
201 |
caaggtagcaggtgagttttaaataaactttaatgtaactagcctgaataggnnnnnnnnnnngttgttgaggggtattctgaataggtttcttcagcat |
300 |
Q |
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| T |
53044099 |
caaggtagcaggtgagttttaaataaactttaatgtaactagcctgaataggtttttttttt--ttgttgaggggtattctgaataggtttcttcagcat |
53044196 |
T |
|
| Q |
301 |
cattttccctactgttatcttattctaatattgtgtcttgtttccagcacttcttaaacgtcaaggattggatgtcaagggcctcgtgaaagctgatcca |
400 |
Q |
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| T |
53044197 |
cattttccctactgttatcttattctaatattgtgtcttgtttccagcacttcttaaacgtcaaggattggatgtcaagggcctcgtgaaagctgatcca |
53044296 |
T |
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| Q |
401 |
gtaaaagaagaacctcaaccctacattgactgcacgggacatttacaagtactcgaatacattttatatcaaataactcatcacaactgatatctcatga |
500 |
Q |
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| T |
53044297 |
gtaaaagaagaacctcaaccctacattgactgcacgggacatttacaagtactcgaatacattttatatcaaataactcatcgcaactgatatctcatga |
53044396 |
T |
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| Q |
501 |
tgcaatttttatcagtattatatttaatttttcagtggtcttatatcccctatgtatttttgatttctcttagtgggagaatctttagaattccaatcac |
600 |
Q |
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| T |
53044397 |
tgcaatttttatcagtattatatttaatttttcagtggtcttatatcccctatgta--tttgatttctcttagtgggagaatctttagaattccaatcac |
53044494 |
T |
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| Q |
601 |
tatattctcaaaactctaccccattctaaagatgatcatcaaaatgagaaacttaaatgcacaagagctatattctatcatatgcttcaaatagccagc |
699 |
Q |
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| T |
53044495 |
tatattctcaaaactctaccccattctaaagatgatcatcaaaatgagaaacttaaatgcacaagagctatattctatcatatgcttcaaatagccagc |
53044593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 346 - 454
Target Start/End: Complemental strand, 15962953 - 15962845
Alignment:
| Q |
346 |
agcacttcttaaacgtcaaggattggatgtcaagggcctcgtgaaagctgatccagtaaaagaagaacctcaaccctacattgactgcacgggacattta |
445 |
Q |
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|||||| || |||||||||||| | |||||||||| || |||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||||||| |
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| T |
15962953 |
agcactcctgaaacgtcaaggagtaaatgtcaagggtctgttgaaagctgacgcagtaaaggaagaacctcaaccttacattgattgcactggacattta |
15962854 |
T |
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| Q |
446 |
caagtactc |
454 |
Q |
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| T |
15962853 |
caggtactc |
15962845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 15963178 - 15963075
Alignment:
| Q |
109 |
gtaatggaaggatttgaaacagtgatgttcaggtccaaatttgattcttggcctcagacaactaatgcagcaatgcctgaagatggtcgtggcaaggtag |
208 |
Q |
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||||| |||||||||||||||||| |||| | |||||| |||||||||||||||||||| || ||| | | | |||||||||| ||||||||||||| |
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| T |
15963178 |
gtaattgaaggatttgaaacagtgttgtttaagtccaagtttgattcttggcctcagacccctgatgtaactgtatctgaagatggacgtggcaaggtag |
15963079 |
T |
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| Q |
209 |
cagg |
212 |
Q |
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|||| |
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| T |
15963078 |
cagg |
15963075 |
T |
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