View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18018_high_14 (Length: 366)

Name: NF18018_high_14
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18018_high_14
NF18018_high_14
[»] chr5 (9 HSPs)
chr5 (72-351)||(14459036-14459315)
chr5 (72-105)||(16485771-16485804)
chr5 (72-105)||(36786617-36786650)
chr5 (72-104)||(16483326-16483358)
chr5 (72-104)||(25340123-25340155)
chr5 (72-104)||(28907543-28907575)
chr5 (72-104)||(28943938-28943970)
chr5 (72-104)||(39560383-39560415)
chr5 (72-104)||(40835867-40835899)
[»] chr1 (6 HSPs)
chr1 (188-342)||(31311491-31311641)
chr1 (72-109)||(42438834-42438871)
chr1 (72-104)||(2844724-2844756)
chr1 (72-104)||(16661990-16662022)
chr1 (72-104)||(38297059-38297091)
chr1 (72-104)||(45542244-45542276)
[»] chr3 (2 HSPs)
chr3 (72-108)||(10118743-10118779)
chr3 (72-104)||(22403195-22403227)
[»] chr7 (3 HSPs)
chr7 (72-106)||(42054455-42054489)
chr7 (72-105)||(6617855-6617888)
chr7 (72-104)||(18781562-18781594)
[»] chr8 (4 HSPs)
chr8 (72-105)||(6421734-6421767)
chr8 (72-105)||(39617121-39617154)
chr8 (72-104)||(12497988-12498020)
chr8 (72-104)||(13276686-13276718)
[»] scaffold0009 (1 HSPs)
scaffold0009 (72-104)||(193874-193906)
[»] chr6 (2 HSPs)
chr6 (72-104)||(4268565-4268597)
chr6 (72-104)||(18898117-18898149)
[»] chr4 (2 HSPs)
chr4 (72-104)||(4946342-4946374)
chr4 (72-104)||(9765472-9765504)
[»] chr2 (2 HSPs)
chr2 (72-104)||(39118926-39118958)
chr2 (72-104)||(42839914-42839946)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 72 - 351
Target Start/End: Original strand, 14459036 - 14459315
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagtaaataaacactacaaaggaatgataaagaacgtggcataacgtagatatccattctttnnnnnnnntg 171  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        ||    
T  14459036 atcccgtgcttggcacgaggcgtaacactagtaaataaacactacaaaggaatgataaagaacgtggcataacatagatatccattctttaaaaaaaatg 14459135  T
Q  172 tagatatccattgtgcgttaggattattagagattaattgcttcggttttagtagttttaaaccaagtctcataaaataacttgtaatgcaagtcatcta 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14459136 tagatatccattgtgcgttaggattattagagattaattgcttcggttttagtagttttaaaccaagtctcataaaataacttgtaatgcaagtcatcta 14459235  T
Q  272 gtctagtgcattctaccttgttgcttgcctataaataagcatcttttgtattttagaagattgaatgaaattcatacttt 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14459236 gtctagtgcattctaccttgttgcttgcctataaataagcatcttttgtattttagaagattgaatgaaattcatacttt 14459315  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 16485771 - 16485804
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagtaa 105  Q
    ||||||||||||||||||||||| ||||||||||    
T  16485771 atcccgtgcttggcacggggcgttacactagtaa 16485804  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 36786650 - 36786617
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagtaa 105  Q
    ||||||||||||||||||||||| ||||||||||    
T  36786650 atcccgtgcttggcacggggcgttacactagtaa 36786617  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 16483326 - 16483358
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  16483326 atcccgtgcttggcacggggcgttacactagta 16483358  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 25340123 - 25340155
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  25340123 atcccgtgcttggcacggggcgttacactagta 25340155  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 28907575 - 28907543
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  28907575 atcccgtgcttggcacggggcgttacactagta 28907543  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 28943970 - 28943938
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  28943970 atcccgtgcttggcacggggcgttacactagta 28943938  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 39560415 - 39560383
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  39560415 atcccgtgcttggcacggggcgttacactagta 39560383  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 40835867 - 40835899
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  40835867 atcccgtgcttggcacggggcgttacactagta 40835899  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 188 - 342
Target Start/End: Complemental strand, 31311641 - 31311491
Alignment:
Q  188 gttaggattattagagattaattgcttcggttttagtagttttaaaccaagtctcataaaataacttgtaatgcaagtcatctagtctagtgcattctac 287  Q
    |||||||| ||||||| |||||||| || | ||||||||||||| || ||||||  ||| |||||||||||||||    ||||||||| ||| ||||||     
T  31311641 gttaggataattagaggttaattgcatcagctttagtagttttagactaagtcttgtaagataacttgtaatgca----atctagtcttgtg-attctat 31311547  T
Q  288 cttgttgc-ttgcctataaataagcatcttttgtattttagaagattgaatgaaat 342  Q
     ||||||| |||||||||||||||||||  ||||| ||||||||| ||||||||||    
T  31311546 tttgttgctttgcctataaataagcatcccttgtagtttagaagaatgaatgaaat 31311491  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 42438834 - 42438871
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagtaaataa 109  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  42438834 atcccgtgcttggcacggggcgttacactagtatataa 42438871  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 2844724 - 2844756
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  2844724 atcccgtgcttggcacggggcgttacactagta 2844756  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 16662022 - 16661990
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  16662022 atcccgtgcttggcacggggcgttacactagta 16661990  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 38297059 - 38297091
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  38297059 atcccgtgcttggcacggggcgttacactagta 38297091  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 45542244 - 45542276
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  45542244 atcccgtgcttggcacggggcgttacactagta 45542276  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 10118779 - 10118743
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagtaaata 108  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10118779 atcccgtgcttggcacggggcgttacactagtaaata 10118743  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 22403195 - 22403227
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  22403195 atcccgtgcttggcacggggcgttacactagta 22403227  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 42054455 - 42054489
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagtaaa 106  Q
    ||||||||||||||||||||||| |||||||||||    
T  42054455 atcccgtgcttggcacggggcgttacactagtaaa 42054489  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 6617855 - 6617888
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagtaa 105  Q
    ||||||||||||||||||||||| ||||||||||    
T  6617855 atcccgtgcttggcacggggcgttacactagtaa 6617888  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 18781594 - 18781562
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  18781594 atcccgtgcttggcacggggcgttacactagta 18781562  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 6421734 - 6421767
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagtaa 105  Q
    ||||||||||||||||||||||| ||||||||||    
T  6421734 atcccgtgcttggcacggggcgttacactagtaa 6421767  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 39617154 - 39617121
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagtaa 105  Q
    ||||||||||||||||||||||| ||||||||||    
T  39617154 atcccgtgcttggcacggggcgttacactagtaa 39617121  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 12498020 - 12497988
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  12498020 atcccgtgcttggcacggggcgttacactagta 12497988  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 13276718 - 13276686
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  13276718 atcccgtgcttggcacggggcgttacactagta 13276686  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 193906 - 193874
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  193906 atcccgtgcttggcacggggcgttacactagta 193874  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 4268597 - 4268565
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  4268597 atcccgtgcttggcacggggcgttacactagta 4268565  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 18898149 - 18898117
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  18898149 atcccgtgcttggcacggggcgttacactagta 18898117  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 4946342 - 4946374
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  4946342 atcccgtgcttggcacggggcgttacactagta 4946374  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 9765504 - 9765472
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  9765504 atcccgtgcttggcacggggcgttacactagta 9765472  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 39118958 - 39118926
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  39118958 atcccgtgcttggcacggggcgttacactagta 39118926  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 42839946 - 42839914
Alignment:
Q  72 atcccgtgcttggcacggggcgtaacactagta 104  Q
    ||||||||||||||||||||||| |||||||||    
T  42839946 atcccgtgcttggcacggggcgttacactagta 42839914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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