View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_high_18 (Length: 339)
Name: NF18018_high_18
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 1543839 - 1544150
Alignment:
| Q |
19 |
tctttttgttttataacacaggtatgtggccaagttgcaaggaagctgttgattgtggagaaaacttttgcattagtcgttttagagtaaaatgctggag |
118 |
Q |
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| T |
1543839 |
tcttcttgttttatatcacaggaaagtggccaagttgcaaagaagctattgattgtggagaaaacttttgcattagtcgttttagagtaaaatgctggag |
1543938 |
T |
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| Q |
119 |
gttcaaatgtttttgtattctgtgataagagtttgacattgtaacttcaacggacaaaatctatatcatgctagtgatgatgaaagtaatcaaaatagta |
218 |
Q |
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| T |
1543939 |
gttcaaatgtttttgtattctgtgataagagtttgacattgtaacttcaacggacaaaatctatatcatgctagtgatgatgaaagtaatcaaaatagta |
1544038 |
T |
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| Q |
219 |
ataattttgataaattatattttgcttttaagcctgcaatttatttgtatgtgataatgttattactttaataatttgtctacactttaatttacac-tt |
317 |
Q |
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| T |
1544039 |
ataattttgataaaatatattttgcttttaagcctgcaacttatttgtatgtcataatgttattactttaataatttgtctacactttaatttacacttt |
1544138 |
T |
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| Q |
318 |
ggttggcctttg |
329 |
Q |
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| T |
1544139 |
ggttggcctttg |
1544150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 1540528 - 1540643
Alignment:
| Q |
19 |
tctttttgttttataacacaggtatgtggccaagttgcaaggaagctgttgattgtggagaaaacttttgcattagtcgttttagagtaaaatgctggag |
118 |
Q |
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|||| |||||||||| |||||| | ||||||||||||||| |||||| ||||||||||| ||||||||||||| ||| ||| | || ||||||| || |
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| T |
1540528 |
tcttcttgttttatatcacaggaaagtggccaagttgcaaagaagctattgattgtggaataaacttttgcattcgtcctttcaaagcaaaatgcatgat |
1540627 |
T |
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| Q |
119 |
gttcaaatgtttttgt |
134 |
Q |
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| T |
1540628 |
gttcacttgtttttgt |
1540643 |
T |
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