View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18018_high_19 (Length: 290)

Name: NF18018_high_19
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18018_high_19
NF18018_high_19
[»] chr2 (15 HSPs)
chr2 (1-275)||(10493365-10493639)
chr2 (1-275)||(7477941-7478215)
chr2 (1-275)||(7481527-7481801)
chr2 (13-274)||(10507936-10508197)
chr2 (14-274)||(10475073-10475332)
chr2 (13-274)||(10518820-10519080)
chr2 (1-275)||(10489292-10489563)
chr2 (13-204)||(10545591-10545781)
chr2 (55-273)||(10446969-10447185)
chr2 (13-274)||(10463876-10464134)
chr2 (14-154)||(10849930-10850070)
chr2 (11-155)||(28102216-28102360)
chr2 (11-155)||(27968459-27968603)
chr2 (11-155)||(28091984-28092128)
chr2 (14-274)||(10863420-10863676)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 10493365 - 10493639
Alignment:
Q  1 cattgtttttcaacacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10493365 cattgtttttcaacacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttatcgtccacctcggacacagtttttata 10493464  T
Q  101 aggtcacgcctttttcttgacaccaaggattccatatttctaggaacttcttcaacaacaaccttttcactgcaataagaaacgaattgagtaatttgaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  10493465 aggtcacgcctttttcttgacaccaaggattccatatttctaggaacttcttcaacaacaaccttttcactgcaataagaaatggattgagtaatttgaa 10493564  T
Q  201 gaatgaccacaaccataaccaatgcaagagattcagaaacagacccatttgaagcatgaaaaaagtaggcctttg 275  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10493565 gaatgaccacaagcataaccaatgcaagagattcagaaacagacccatttgaagcatgaaaaaagtaggcctttg 10493639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 7478215 - 7477941
Alignment:
Q  1 cattgtttttcaacacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttata 100  Q
    |||||||  |||||||||||||||||||||| ||||| |||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7478215 cattgttactcaacacacctcaagatcagctactgagttggacttgtcactgcaaaaagcttcagcaagtttattgtccacctcggacacagtttttata 7478116  T
Q  101 aggtcacgcctttttcttgacaccaaggattccatatttctaggaacttcttcaacaacaaccttttcactgcaataagaaacgaattgagtaatttgaa 200  Q
    |||||||||||||||||||||||||||  |||||||  |  |||||||||||||||   | ||||||| |||||||||||||| ||||||||||||||||    
T  7478115 aggtcacgcctttttcttgacaccaagacttccatacatgaaggaacttcttcaacggtagccttttctctgcaataagaaacaaattgagtaatttgaa 7478016  T
Q  201 gaatgaccacaaccataaccaatgcaagagattcagaaacagacccatttgaagcatgaaaaaagtaggcctttg 275  Q
    |||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||||| ||||    
T  7478015 gaatgaccacaagcataaccaatgcaaaagtttcagaaacagacctatttgaagcatgaaaaaagtaggcttttg 7477941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 7481801 - 7481527
Alignment:
Q  1 cattgtttttcaacacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttata 100  Q
    |||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||  |||||| |||||||| ||||    
T  7481801 cattgttactcaacacacctcaagatcagcggctgagatgggcttgtcactgctaaaagcttcagcaagtttatcgtcagcctcgggcacagtttctata 7481702  T
Q  101 aggtcacgcctttttcttgacaccaaggattccatatttctaggaacttcttcaacaacaaccttttcactgcaataagaaacgaattgagtaatttgaa 200  Q
    |||||||||||||||||||||||||||| |||||||     ||||||||||||||||  | ||||||| ||||||||| |||||||||| || |||||||    
T  7481701 aggtcacgcctttttcttgacaccaaggcttccatacacgcaggaacttcttcaacagtagccttttctctgcaataaaaaacgaattgggttatttgaa 7481602  T
Q  201 gaatgaccacaaccataaccaatgcaagagattcagaaacagacccatttgaagcatgaaaaaagtaggcctttg 275  Q
    |||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||    
T  7481601 gaatgaccacaagcataaccaatgcaaaagtttcagaaacagacccatttgaagcatgaaaaaagtaggcttttg 7481527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 10507936 - 10508197
Alignment:
Q  13 acacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttataaggtcacgcctt 112  Q
    |||||||||||||||||||||||| ||||| |||||||  |  ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  10507936 acacacctcaagatcagctgctgatatgggcttgtcaccaccgaaagcttcagcaagtttatcgtcaacctcggacacagtttttataagttcacgcctt 10508035  T
Q  113 tttcttgacaccaaggattccatatttctaggaacttcttcaacaacaaccttttcactgcaataagaaacgaattgagtaatttgaagaatgaccacaa 212  Q
    |||| |||||||||||  |||||||  | |||||||||| |||| ||||||||||| |||||||||||||| ||||||||||||| ||||| ||||| ||    
T  10508036 tttcctgacaccaaggcgtccatatagccaggaacttctccaacgacaaccttttctctgcaataagaaacaaattgagtaatttcaagaaagaccataa 10508135  T
Q  213 ccataaccaatgcaagagattcagaaacagacccatttgaagcatgaaaaaagtaggccttt 274  Q
     |||||||| ||||| || ||| ||||| |||||||| ||| ||||||||||||||||||||    
T  10508136 gcataaccattgcaaaagtttctgaaacggacccattagaaccatgaaaaaagtaggccttt 10508197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 10475073 - 10475332
Alignment:
Q  14 cacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttataaggtcacgccttt 113  Q
    ||||||||||||||||||||||||||||| |||||||  || |||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  10475073 cacacctcaagatcagctgctgagatgggcttgtcaccactgaaagcttctgcaagtttatcgtccacctcggacacagtttttataagttcacgccttt 10475172  T
Q  114 ttcttgacaccaaggattccatatttctaggaacttcttcaacaacaaccttttcactgcaataagaaacgaattgagtaatttgaagaatgaccacaac 213  Q
    |   ||||||||||| |||||||| || ||||||||||||||| | ||||||||  |||||||||||||| || | |||||| |||||||| | |||       
T  10475173 tctgtgacaccaaggcttccatatatccaggaacttcttcaacgaaaaccttttgtctgcaataagaaac-aactcagtaatatgaagaataatcacggg 10475271  T
Q  214 cataaccaatgcaagagattcagaaacagacccatttgaagcatgaaaaaagtaggccttt 274  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||    
T  10475272 cataaccaatgcaaaagtttcagaaacagacccatttgaatcatgaaaaaagtaggccttt 10475332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 10518820 - 10519080
Alignment:
Q  13 acacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttataaggtcacgcctt 112  Q
    |||||||| ||||||||| ||||| ||||| ||| || ||| |||||||||||||||||||  |||||||||||||||||||||||| || ||| |||||    
T  10518820 acacaccttaagatcagcagctgatatgggcttgccaatgcaaaaagcttcagcaagtttaccgtccacctcggacacagtttttatgagttcatgcctt 10518919  T
Q  113 tttcttgacaccaaggattccatatttctaggaacttcttcaacaacaaccttttcactgcaataagaaacgaattgagtaatttgaagaatgaccacaa 212  Q
    |||  ||||||||||| |||||||| | | |||||||||||||| ||||||||||  |||||||||||||| | |||||| ||||||||||| ||||||     
T  10518920 ttttctgacaccaaggcttccatatatgtgggaacttcttcaacgacaaccttttttctgcaataagaaac-atttgagtgatttgaagaataaccacag 10519018  T
Q  213 ccataaccaatgcaagagattcagaaacagacccatttgaagcatgaaaaaagtaggccttt 274  Q
     || |||||||| || || |||||||||||||||||||||| ||||||||||||||||||||    
T  10519019 gcagaaccaatgaaaaagtttcagaaacagacccatttgaatcatgaaaaaagtaggccttt 10519080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 10489292 - 10489563
Alignment:
Q  1 cattgtttttcaacacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttata 100  Q
    |||||||  ||||||||||| ||||||||||||||| || || |||||||   | ||||||||||||||||||| |||||||||||||||||||||||||    
T  10489292 cattgttactcaacacacctgaagatcagctgctgatataggcttgtcaccattgaaagcttcagcaagtttatcgtccacctcggacacagtttttata 10489391  T
Q  101 aggtcacgcctttttcttgacaccaaggattccatatttctaggaacttcttcaacaacaaccttttcactgcaataagaaacgaattgagtaatttgaa 200  Q
    || ||| ||||||||  ||||||||||| |||||||| || |||||||   ||| | |||| |||||| |||||||||||||  ||||||||| | ||||    
T  10489392 agttcatgccttttttctgacaccaaggcttccatatatccaggaactagctcagcgacaagcttttctctgcaataagaaa-taattgagtactatgaa 10489490  T
Q  201 gaatgaccacaaccataaccaatgcaagagattcagaaacagacccatttgaagcatgaaaaaagtaggcctttg 275  Q
    |||| | ||||  ||||||||| |||| ||  | ||||||||||| |||||||||||||||||| ||||||||||    
T  10489491 gaataatcacaggcataaccaaagcaaaag--ttagaaacagacctatttgaagcatgaaaaaaataggcctttg 10489563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 10545591 - 10545781
Alignment:
Q  13 acacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttataaggtcacgcctt 112  Q
    |||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||| ||| ||||| || ||||||||||| || ||| |||||    
T  10545591 acacacctcaagatcagctgctgaaatgggcttgtcgctgcaaaaagcttcagcaagtttatcgtctacctctgatacagtttttatgagttcatgcctt 10545690  T
Q  113 tttcttgacaccaaggattccatatttctaggaacttcttcaacaacaaccttttcactgcaataagaaacgaattgagtaatttgaagaat 204  Q
    |||  ||||||||||| |||||||| |   |||||||||||||||||||||||||| |||||||||| |||  |||||||||||||||||||    
T  10545691 ttttctgacaccaaggcttccatatcttcgggaacttcttcaacaacaaccttttctctgcaataagcaac-cattgagtaatttgaagaat 10545781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 55 - 273
Target Start/End: Original strand, 10446969 - 10447185
Alignment:
Q  55 aaaagcttcagcaagtttattgtccacctcggacacagtttttataaggtcacgcctttttcttgacaccaaggattccatatttctaggaacttcttca 154  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||||||  ||| ||||||||  ||||||||||| |||||||| |  |||||||||||||    
T  10446969 aaaagcttccgcaagtttgttgtccacctcagacacagtttttataat-tcatgccttttttctgacaccaaggcttccatatctgcaggaacttcttca 10447067  T
Q  155 acaacaaccttttcactgcaataagaaacgaattgagtaatttgaagaatgaccacaaccataaccaatgcaagagattcagaaacagacccatttgaag 254  Q
    || |||| |||||| |||||||||||||  |||||| ||||||||||||| |  ||   |||||||||||||| || ||||||||| ||| |||||| |     
T  10447068 acgacaatcttttctctgcaataagaaa-taattgaataatttgaagaataatgacggacataaccaatgcaaaagtttcagaaactgactcatttggac 10447166  T
Q  255 catgaaaaaagtaggcctt 273  Q
    |||||||| ||||||||||    
T  10447167 catgaaaagagtaggcctt 10447185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 10463876 - 10464134
Alignment:
Q  13 acacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttataaggtcacgcctt 112  Q
    |||||||| ||||||||||||||| ||||| ||| |||||| |||||| |||||||||||||  ||||| || |||||||||||||| || ||| |||||    
T  10463876 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacagtttttatgagttcatgcctt 10463975  T
Q  113 tttcttgacaccaaggattccatatttctaggaacttcttcaacaacaaccttttcactgcaataagaaacgaattgagtaatttgaagaatgaccacaa 212  Q
    |||  | ||||||| | |||||||| |  ||||||||||||||  |||||| ||   |||||||||||||| |||||||||||||||||||| | |||      
T  10463976 ttttctaacaccaaagcttccatatctgcaggaacttcttcaatgacaaccattattctgcaataagaaac-aattgagtaatttgaagaataaacaccg 10464074  T
Q  213 ccataaccaatgcaagagattcagaaacagacccatttgaagcatgaaaaaagtaggccttt 274  Q
     |||||  |||| || || |||||||||||||||||||| | |||||||| |||||| ||||    
T  10464075 gcataa--aatgaaaaagtttcagaaacagacccatttggaccatgaaaatagtaggacttt 10464134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 10849930 - 10850070
Alignment:
Q  14 cacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttataaggtcacgccttt 113  Q
    |||||||||||||||| |||||| ||||| ||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||| || ||||||||||    
T  10849930 cacacctcaagatcaggtgctgatatgggcttgtcacagcgaaaagcttcagcaagtttatcgtccacctcagacacagtttgtatgagctcacgccttt 10850029  T
Q  114 ttcttgacaccaaggattccatatttctaggaacttcttca 154  Q
    ||  |||||| |||  |||||||| |  |||||||||||||    
T  10850030 tttctgacacgaagtcttccatatcttcaggaacttcttca 10850070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 28102360 - 28102216
Alignment:
Q  11 caacacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttataaggtcacgcc 110  Q
    ||||||||||||||||||| |||||| ||||| || ||||||| |||||||||||||||||| | ||||||||  |||||||||| ||| || |||||||    
T  28102360 caacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttctatgagttcacgcc 28102261  T
Q  111 tttttcttgacaccaaggattccatatttctaggaacttcttcaa 155  Q
    | |||  ||| ||||||| || ||||| |  ||||||||||||||    
T  28102260 tcttttctgagaccaaggctttcatatctgcaggaacttcttcaa 28102216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 27968459 - 27968603
Alignment:
Q  11 caacacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttataaggtcacgcc 110  Q
    ||||||||||||||||||| |||||| ||||| || || |||| |||||||||||||||||| | ||||||||  |||||||||| ||| || |||||||    
T  27968459 caacacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttctatgagttcacgcc 27968558  T
Q  111 tttttcttgacaccaaggattccatatttctaggaacttcttcaa 155  Q
    | |||  ||| ||||||| || ||||| |  ||||||||||||||    
T  27968559 tcttttctgagaccaaggctttcatatctgcaggaacttcttcaa 27968603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 28092128 - 28091984
Alignment:
Q  11 caacacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttataaggtcacgcc 110  Q
    ||||||||||||||||||| |||||| ||||| || || |||| |||||||||||||||||| | ||||||||  |||||||||| ||| || |||||||    
T  28092128 caacacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttctatgagttcacgcc 28092029  T
Q  111 tttttcttgacaccaaggattccatatttctaggaacttcttcaa 155  Q
    | |||  ||| ||||||| || ||||| |  ||||||||||||||    
T  28092028 tcttttctgagaccaaggctttcatatctgcaggaacttcttcaa 28091984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 10863420 - 10863676
Alignment:
Q  14 cacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttattgtccacctcggacacagtttttataaggtcacgccttt 113  Q
    ||||||||||| |||||| |||| ||  |  ||||||||  || |||||||||||||||||  |||||||| ||||| |||| ||| || ||  | ||||    
T  10863420 cacacctcaagttcagctcctgatataagtctgtcactggaaagagcttcagcaagtttatcatccacctctgacacggtttctatgagttcctgtcttt 10863519  T
Q  114 ttcttgacaccaaggattccatatttctaggaacttcttcaacaacaaccttttcactgcaataagaaacgaattgagtaatttgaagaatgaccacaac 213  Q
    ||   |||||| ||| |||||||| |  ||||||||| ||||| | ||||||||| ||||||| |||||| |||||||||||||||| |||   ||        
T  10863520 tttcagacaccgaggcttccatatgtgcaggaacttcctcaacgaaaaccttttctctgcaatcagaaac-aattgagtaatttgaataat---catgga 10863615  T
Q  214 cataaccaatgcaagagattcagaaacagacccatttgaagcatgaaaaaagtaggccttt 274  Q
     |||||||| | |  ||  |||||||| |||||||||||| |||||||| |||||||||||    
T  10863616 tataaccaagggagaagtctcagaaacggacccatttgaaccatgaaaatagtaggccttt 10863676  T

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