View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_high_22 (Length: 283)
Name: NF18018_high_22
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_high_22 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 40945420 - 40945138
Alignment:
| Q |
1 |
aaggaacgaagggttacctgatattcgaatctcaggtgacacttctaaatttcggtatacaaatcgacaaggacaaaggtcagcattgaggatatcaagg |
100 |
Q |
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| T |
40945420 |
aaggaacgaagggttacctgatattcgaatctcagatgacacttctaaatttcggtatacaaatcgacagggacaaaggtcagcattgaggatatcaagg |
40945321 |
T |
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| Q |
101 |
gttgtgacagagacattgaagcttggattgaaagatgtaagatggtttgtgatgggagatgatgatactgtttttgttgttgataatgttgttagaattc |
200 |
Q |
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| T |
40945320 |
gttgtgacagagacattgaagcttggattgaaagatgtaagatggtttgtgatgggagatgatgatactgtttttgttgttgataatgttgttagaattc |
40945221 |
T |
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| Q |
201 |
tttcaaagtatgaccatagacatttttattatgttggtagttcttctgagagccatgtccagaatattcatttttcatatgct |
283 |
Q |
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| T |
40945220 |
tttcaaagtatgaccatagacatttttattatgttggtagttcttctgagagtcatgtccagaatattcatttttcatatgct |
40945138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 22776793 - 22776524
Alignment:
| Q |
14 |
ttacctgatattcgaatctcaggtgacacttctaaatttcggtatacaaatcgacaaggacaaaggtcagcattgaggatatcaagggttgtgacagaga |
113 |
Q |
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| T |
22776793 |
ttaccagatattcaaatttcgggggacactagtagatttaagtatacgaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagaga |
22776694 |
T |
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| Q |
114 |
cattgaagcttggattgaaagatgtaagatggtttgtgatgggagatgatgatactgtttttgttgttgataatgttgttagaattctttcaaagtatga |
213 |
Q |
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| T |
22776693 |
cattgaaacttgggttggaggatgtgagatggttcatgatgggagatgatgatactgtgtttatggttgataatgtggttagagttctttcaaaatatga |
22776594 |
T |
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| Q |
214 |
ccatagacatttttattatgttggtagttcttctgagagccatgtccagaatattcatttttcatatgct |
283 |
Q |
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|||| || |||||||||||||| || || |||||||| ||||| ||||| || ||||| || |||||| |
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| T |
22776593 |
tcatactcaattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcgtatgct |
22776524 |
T |
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