View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_high_24 (Length: 257)
Name: NF18018_high_24
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 36383600 - 36383817
Alignment:
| Q |
18 |
tatgcaacctctactctaaaggcccttaaatgcttctacacctctgggctcacgtctgtcttattctgatcatggtttcatagcttcgcacctgtgtccg |
117 |
Q |
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| T |
36383600 |
tatgcaacctctactctaaaggcccttaaatgcttctacacctctgggctcacgtctgtcttattctgatcatggtttcatagcttcgcacctgtgtccg |
36383699 |
T |
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| Q |
118 |
atggaacctagtcttgtaatataggaatacaatgcaaaaagttcctcatctagttaagaaagaacaaaagtgagtctgagcgaaacttgtcctccttgga |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36383700 |
atggaacctagtcttgtaatataggattacaatgcaaaaagttcctcatctagttaagaaagaacaaaagtgagtctgagcgaaacttgtcctccttgga |
36383799 |
T |
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| Q |
218 |
agctggtataatggaaat |
235 |
Q |
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||||||||||||| |||| |
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| T |
36383800 |
agctggtataatgaaaat |
36383817 |
T |
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