View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_high_32 (Length: 203)
Name: NF18018_high_32
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 40945160 - 40944991
Alignment:
| Q |
15 |
agaatattcatttttcatatgctatggcatatggtggtggtggatttgctataagttatccattggccgtggagttggctacgatgcaagatcgttgtat |
114 |
Q |
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| T |
40945160 |
agaatattcatttttcatatgctatggcatatggtggtggtggatttgctataagttatccattggccgtggagttggctacgatgcaagatcgttgtat |
40945061 |
T |
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| Q |
115 |
tcagaggtaccctgctttgtatggtagtgatgatagaatgcaagcatgtatggctgagttaggtgtgcca |
184 |
Q |
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| T |
40945060 |
tcagaggtaccctgctttgtatggtagtgatgatagaatgcaagcatgtatggctgagttaggtgtgcca |
40944991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 22776538 - 22776376
Alignment:
| Q |
23 |
catttttcatatgctatggcatatggtggtggtggatttgctataagttatccattggccgtggagttggctacgatgcaagatcgttgtattcagaggt |
122 |
Q |
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| T |
22776538 |
catttctcgtatgctatggcttatggtggtggaggatttgctataagctaccctttggctaaggagcttgcaaagatgcaggatcgttgtattcaacgtt |
22776439 |
T |
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| Q |
123 |
accctgctttgtatggtagtgatgatagaatgcaagcatgtatggctgagttaggtgtgccat |
185 |
Q |
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| T |
22776438 |
accctgctttgtatggcagtgatgatagaatgcaagcttgcatggctgagctaggtgttccat |
22776376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 5e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 11092055 - 11092212
Alignment:
| Q |
15 |
agaatattcatttttcatatgctatggcatatggtggtggtggatttgctataagttatccattggccgtggagttggctacgatgcaagatcgttgtat |
114 |
Q |
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| T |
11092055 |
agaatatttatttttcttataatatggcttatggtggtggtggatttgctataagttatcctttggctgttgctttggagaaaatgcaagataggtgtat |
11092154 |
T |
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| Q |
115 |
tcagaggtaccctgctttgtatggtagtgatgatagaatgcaagcatgtatggctgag |
172 |
Q |
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||| ||||| |||| |||||||||| ||||||||| || ||||| |||||||||||| |
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| T |
11092155 |
tcaaaggtatcctggtttgtatggttctgatgataggattcaagcttgtatggctgag |
11092212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 41319877 - 41319822
Alignment:
| Q |
26 |
ttttcatatgctatggcatatggtggtggtggatttgctataagttatccattggc |
81 |
Q |
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| T |
41319877 |
ttttcctatggtatggcttatggtggtggtggatttgctataagctatcctttggc |
41319822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 29613163 - 29613006
Alignment:
| Q |
15 |
agaatattcatttttcatatgctatggcatatggtggtggtggatttgctataagttatccattggccgtggagttggctacgatgcaagatcgttgtat |
114 |
Q |
| |
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|||||||| ||||||| ||| |||||| ||||||||||||||||||||||| |||||||| ||||| || | |||| | ||||||||| | ||||| |
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| T |
29613163 |
agaatattaatttttcttataatatggcttatggtggtggtggatttgctattagttatcctttggctgttgcattggagagaatgcaagataggtgtat |
29613064 |
T |
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| Q |
115 |
tcagaggtaccctgctttgtatggtagtgatgatagaatgcaagcatgtatggctgag |
172 |
Q |
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| | ||||||||| |||||||| |||||||| || ||||| |||||||||||| |
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| T |
29613063 |
tgaaaggtaccctaaattgtatgggtcagatgataggattcaagcttgtatggctgag |
29613006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 2619342 - 2619400
Alignment:
| Q |
15 |
agaatattcatttttcatatgctatggcatatggtggtggtggatttgctataagttat |
73 |
Q |
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||||||| ||||||| |||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
2619342 |
agaatatatatttttcttatggtatggcttatggtggtggtggatttgctattagttat |
2619400 |
T |
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