View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18018_high_4 (Length: 636)

Name: NF18018_high_4
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18018_high_4
NF18018_high_4
[»] chr1 (9 HSPs)
chr1 (14-362)||(50947480-50947828)
chr1 (370-622)||(50947165-50947418)
chr1 (514-619)||(50956680-50956785)
chr1 (520-593)||(50963653-50963726)
chr1 (375-471)||(50956807-50956904)
chr1 (515-606)||(15855040-15855131)
chr1 (380-461)||(15855230-15855310)
chr1 (436-482)||(50963770-50963816)
chr1 (371-419)||(50963816-50963864)
[»] chr5 (2 HSPs)
chr5 (374-622)||(33630444-33630696)
chr5 (47-207)||(33630938-33631101)
[»] chr6 (1 HSPs)
chr6 (264-315)||(26900997-26901048)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 50947828 - 50947480
Alignment:
Q  14 attatactcggggtatatccaagttaatccggctataacaatatctggttaacttatgtagcttatgaccaaactatgaattttcaatggtcgtttttat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  50947828 attatactcggggtatatccaagttaatccggctataacaatatctggttaacttatttagcttatgaccaaactatgaattttcaatggtcatttttat 50947729  T
Q  114 tagttttttgttgagaatattgaaatgacagagaattggtaataatgtttctattcaattgattttctctgtatatttacagtgattatatagctggctc 213  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50947728 tagttttttgttgagaatattgaaatgacagagacttggtaaaaatgtttctattcaattgattttctctgtatatttacagtgattatatagctggctc 50947629  T
Q  214 tattttaggaaatcatttaaatcagaataactctgattctttgacttaagtcattgacacaatcagccacaatgaatggtaaatctgacacaataaaata 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50947628 tattttaggaaatcatttaaatcagaataactctgattctttgacttaagtcattgacacaatcagccacaatgaatggtaaatctgacacaataaaata 50947529  T
Q  314 cacagctcgttagacaaccaatgggttaaaaaagaccaaaagacactaa 362  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  50947528 cacaggtcgttagacaaccaaagggttaaaaaagaccaaaagacactaa 50947480  T

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Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 370 - 622
Target Start/End: Complemental strand, 50947418 - 50947165
Alignment:
Q  370 taaccaaccaagttaggaaattgattatatctcaacataaatttcccatagcaaacagaatctcaaattttaactccaaattaattaaactaacatcatg 469  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50947418 taaccaacgaagttaggaaattgattatatctcaacataaatttcacatagcaaacagaatctcaaattttaactccaaattaattaaactaacatcatg 50947319  T
Q  470 atgttacatgtaagaatataaatatgacat-nnnnnnnnnnnnnnaaaaacaactaaccaagactagcgcaaacagtgtgtggcgatcaacttcgatgaa 568  Q
    ||||||||||||||||||||||||||||||               ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50947318 atgttacatgtaagaatataaatatgacatgagaaaaaaagaaaaaaaaaaaactaaccaagactagcgcaaacagtgtgtggcgatcaacttcgatgaa 50947219  T
Q  569 ctcaaggtcccaactacggagacttttttcattatctccggcatatgcatgttt 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50947218 ctcaaggtcccaactacggagacttttttcattatctccggcatatgcatgttt 50947165  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 514 - 619
Target Start/End: Complemental strand, 50956785 - 50956680
Alignment:
Q  514 aaaaacaactaaccaagactagcgcaaacagtgtgtggcgatcaacttcgatgaactcaaggtcccaactacggagacttttttcattatctccggcata 613  Q
    ||||| |||||||||||||||| |||||||  |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| ||||     
T  50956785 aaaaataactaaccaagactagggcaaacaaagtgtggcgatcaactttgatgaattcaaggtcccaattacggagacttttttcattatctccagcatc 50956686  T
Q  614 tgcatg 619  Q
    ||||||    
T  50956685 tgcatg 50956680  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 520 - 593
Target Start/End: Complemental strand, 50963726 - 50963653
Alignment:
Q  520 aactaaccaagactagcgcaaacagtgtgtggcgatcaacttcgatgaactcaaggtcccaactacggagactt 593  Q
    |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||   ||||||||||    
T  50963726 aactaaccaagactagggcaaacaatgtgtggcgatcaactttgatgaactcaaggtcccaggaacggagactt 50963653  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 375 - 471
Target Start/End: Complemental strand, 50956904 - 50956807
Alignment:
Q  375 aaccaagttaggaaattgattatatctcaacataaatttcc-catagcaaacagaatctcaaattttaactccaaattaattaaactaacatcatgat 471  Q
    |||||||||||||||||||||  | ||||| ||||||||   |||||||||| |||||||||||||| |||||||| || ||||||||||| ||||||    
T  50956904 aaccaagttaggaaattgattccagctcaatataaattttaacatagcaaaccgaatctcaaattttgactccaaaatacttaaactaacaccatgat 50956807  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 606
Target Start/End: Complemental strand, 15855131 - 15855040
Alignment:
Q  515 aaaacaactaaccaagactagcgcaaacagtgtgtggcgatcaacttcgatgaactcaaggtcccaactacggagacttttttcattatctc 606  Q
    |||| |||||||||||||||  ||||||| |||  || ||||||||| |||||||||  | |||||| ||||||||||||||||||||||||    
T  15855131 aaaataactaaccaagactatagcaaacaatgtacggtgatcaactttgatgaactcttgatcccaaatacggagacttttttcattatctc 15855040  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 380 - 461
Target Start/End: Complemental strand, 15855310 - 15855230
Alignment:
Q  380 agttaggaaattgattatatctcaacataaatttcccatagcaaacagaatctcaaattttaactccaaattaattaaacta 461  Q
    |||||| | ||||||| |||||||  ||||||||| ||| ||||||||||||| |||||||||||||||| || ||||||||    
T  15855310 agttagtatattgattctatctcagtataaatttcacattgcaaacagaatct-aaattttaactccaaaatacttaaacta 15855230  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 482
Target Start/End: Complemental strand, 50963816 - 50963770
Alignment:
Q  436 attttaactccaaattaattaaactaacatcatgatgttacatgtaa 482  Q
    |||||||||||||| ||  |||||||||||||| |||||||||||||    
T  50963816 attttaactccaaaatacataaactaacatcattatgttacatgtaa 50963770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 50963864 - 50963816
Alignment:
Q  371 aaccaaccaagttaggaaattgattatatctcaacataaatttcccata 419  Q
    |||||||||||||| || ||||||| |||||||| ||||||||| ||||    
T  50963864 aaccaaccaagttaagatattgattctatctcaatataaatttcacata 50963816  T

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Target: chr5 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 374 - 622
Target Start/End: Complemental strand, 33630696 - 33630444
Alignment:
Q  374 caaccaagttaggaaattgattatatctcaaca---taaatttcccatagcaaacagaatctcaaattttaactccaaattaattaaactaacatcatga 470  Q
    ||||||||||| || ||||||| ||||||||||   |||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||  |||    
T  33630696 caaccaagttacgatattgattctatctcaacaacataaatttcacatagcaaacagaatctcaaattttaactccaaaataatcaaactaacatgttga 33630597  T
Q  471 tgttacatgtaagaatataaatatgac-atnnnnnnnnnnnnnnaaaaacaactaaccaagactagcgcaaacagtgtgtggcgatcaacttcgatgaac 569  Q
    |||||||||||| ||||||| ||||||  |              ||||| |||| || |||||||| ||||||| || ||||||||||||||| ||||||    
T  33630596 tgttacatgtaaaaatataagtatgactgtgacatgagaaaagcaaaaataacttactaagactagggcaaacaatgcgtggcgatcaacttctatgaac 33630497  T
Q  570 tcaaggtcccaactacggagacttttttcattatctccggcatatgcatgttt 622  Q
    |||||||||||| ||||||||||||||||||||||||| || | |||||||||    
T  33630496 tcaaggtcccaattacggagacttttttcattatctccagcttctgcatgttt 33630444  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 47 - 207
Target Start/End: Complemental strand, 33631101 - 33630938
Alignment:
Q  47 tataacaatatctggttaactt-atgtagcttatgaccaaactatgaattttcaatggtcgtttttattagtttttt-gttgagaatattgaaatgacag 144  Q
    |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||| ||| |  |||||||| |||||||||||||    
T  33631101 tataacaatatctggttaactttatttagcttatgaccaaactatgcattttcaatggtcttttttattattttgtgcgttgagaaaattgaaatgacag 33631002  T
Q  145 agaatt-ggtaataatgtttctattcaattgattttctctgtatatttacagtgattatatagc 207  Q
    ||| || ||||| ||   ||||||||||||||||||||||||||||||||| ||||||||||||    
T  33631001 agacttaggtaaaaaaaattctattcaattgattttctctgtatatttacaatgattatatagc 33630938  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 26900997 - 26901048
Alignment:
Q  264 tcattgacacaatcagccacaatgaatggtaaatctgacacaataaaataca 315  Q
    |||||||||||||    ||||||||||| |||||||||||||||||||||||    
T  26900997 tcattgacacaatttatcacaatgaatgataaatctgacacaataaaataca 26901048  T

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