View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_low_10 (Length: 437)
Name: NF18018_low_10
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 19137399 - 19137101
Alignment:
| Q |
14 |
caagaccttcgccctgtgtttgtgggaaagacacggcggcgataccttgttaactctgaagttgttggtcatcctctttttaaggagcttgtggataggt |
113 |
Q |
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| T |
19137399 |
caagaccttcgccccgtgtttgtgggaaagacacggcggcgataccttgttaactctgaagttgttggtcatcctctttttaaggagcttgtggataggt |
19137300 |
T |
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| Q |
114 |
cacgcgattcgaccgaggtaaatgatgaagatgatacggttaacgtggcttgtgaggttgtcttgttcgagcatatgttgtggatgattgagaatactga |
213 |
Q |
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| T |
19137299 |
cacgcgattcgaccgaggtaaatgatgaagatgatacggttaacgtggcttgtgaggttgtcttgttcgagcatatgttgtggatgattgagaatactga |
19137200 |
T |
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| Q |
214 |
tcctcaaccggaatcattggatgaactcgtcgattattacagttgctagctgtgtcgtggtaacagcatttgagcaaaagatcatgcattaatatccct |
312 |
Q |
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| T |
19137199 |
tcctcaaccggaatcattggatgaactcgttgattattacagttgctagctgtgtcgtggtaacagcatttgagcaaaagatcatgcattagtatccct |
19137101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 19137078 - 19136993
Alignment:
| Q |
341 |
cataatgcttaggttaaacaaataagaccgattaatcagagattagtcattaatctatatgacctggttctccacacaagtttcat |
426 |
Q |
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| T |
19137078 |
cataatgcttaggttaaacaaataagaccgattaatcagagattagtcattaatctatatgacttggttctccacacaagtttcat |
19136993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 51687326 - 51687418
Alignment:
| Q |
161 |
gcttgtgaggttgtcttgttcgagcatatgttgtggatgattgagaatactgatcctcaaccggaatcattggatgaactcgtcgattattac |
253 |
Q |
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| T |
51687326 |
gcttgtgaggttgtccttttcgaacatttgttatggatgcttgaaaatgctgatcctcaacctgaatctcttgatgaacttgtcgatttttac |
51687418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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