View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_low_13 (Length: 386)
Name: NF18018_low_13
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 23 - 373
Target Start/End: Complemental strand, 37485795 - 37485448
Alignment:
| Q |
23 |
attggtatcagagttgcatttgttcattgaatgaacgtaagaaaatatgacctcctgtcaccaattatctattttttaaattatttattctccacatgaa |
122 |
Q |
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| T |
37485795 |
attggtatcagagttgcatttattcattgaatgaacgtaacaaaatatgacctc-tgtcaccaattatctattttttaaattatttattctccacatgaa |
37485697 |
T |
|
| Q |
123 |
ttttactatcttactaaactagaaaatcaagtctttgactcaaacataaaaggagtatgggtagccatacgacccgaccctgtatgagttcaaacccaaa |
222 |
Q |
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| T |
37485696 |
ttctactatcttactaaactagaaaatcaagtctttgactcaaacataaaaggagtatgggtagccatacgacccgaccctgtatgagttcaaacccaaa |
37485597 |
T |
|
| Q |
223 |
actaagaaggcaagagagaagttcaggtatcataatagcctgatcctcttaagttcaagtccaactaatgtcgtaaatatatgataaataaaactcaact |
322 |
Q |
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| T |
37485596 |
actaagaaggcaagagaggagttcaggtattatgatagcctaatcctcttaagtttaagtccaactaatgtcgtaaatatatgataaataagcctcaact |
37485497 |
T |
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| Q |
323 |
tcaaatagagcaacaagcccaaacaataataaaaatagagacatgcgacct |
373 |
Q |
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| T |
37485496 |
tcaaatagagtaacaagcccagacaataataaaaat--agacatgcgacct |
37485448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 116 - 294
Target Start/End: Complemental strand, 6824838 - 6824661
Alignment:
| Q |
116 |
acatgaattttactatcttactaaactagaaaatcaagtctttgactcaaacataaaaggagtatgggtagccatacgacccgaccctgtatgagttcaa |
215 |
Q |
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| T |
6824838 |
acatgaattctactatcctaccaaactagaaaatccagcctatggctcaaa-acaaaaggagtacatgtagctacaagggcctactttgtttgagttcaa |
6824740 |
T |
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| Q |
216 |
acccaaaactaagaaggcaagagagaagttcaggtatcataatagcctgatcctcttaagttcaagtccaactaatgtc |
294 |
Q |
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||| |||||||||||||||| |||| |||||||||| | ||| || | ||||||||||||||||||||||||||||||| |
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| T |
6824739 |
acctaaaactaagaaggcaatagaggagttcaggtagcctaacaggccgatcctcttaagttcaagtccaactaatgtc |
6824661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 116 - 373
Target Start/End: Original strand, 24853638 - 24853894
Alignment:
| Q |
116 |
acatgaattttactatcttactaaactagaaaatcaagtctttgactcaaacataaaaggagtatgggtagccatacgacccgaccctgtatgagttcaa |
215 |
Q |
| |
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||||||||| ||||||| ||| |||||||||||| | || ||||||||| | |||||||||| | |||||| | | || || || | ||||||||| |
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| T |
24853638 |
acatgaattctactatcctaccaaactagaaaatttaaactatgactcaaa-acaaaaggagtacagctagccacaaggccttactctatttgagttcaa |
24853736 |
T |
|
| Q |
216 |
acccaaaactaagaaggcaagagagaagttcaggtatcataatagcctgatcctcttaagttcaagtccaactaatgtcgtaaatatatgataaataaaa |
315 |
Q |
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|||||||||||||||||||| |||| |||||||| | | ||| | || | ||||||||||| ||||||||||||||||| ||| ||| |||||| | |
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| T |
24853737 |
acccaaaactaagaaggcaatagaggagttcaggaagcttaacaacccaaccctcttaagtttaagtccaactaatgtcgcaaacctattgcaaataaga |
24853836 |
T |
|
| Q |
316 |
ctcaacttcaaatagagcaacaagcccaaacaat-aataaaaatagagacatgcgacct |
373 |
Q |
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||||| |||| |||||| ||||| ||| |||| ||||||||| ||||| |||||||| |
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| T |
24853837 |
ctcaagttcagatagag-tacaagtccaggcaataaataaaaatggagacttgcgacct |
24853894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 368
Target Start/End: Complemental strand, 5663015 - 5662768
Alignment:
| Q |
118 |
atgaattttactatcttactaaactagaaaatcaagtctttgactcaaacataaaaggagtatgggtagccatacgacccgaccctgtatgagttcaaac |
217 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||||| |||||| || ||||| ||||| |||||||| | ||| || ||| ||||||||||| |
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| T |
5663015 |
atgaattttactatcctactaaactagaaaatccagtctacgactcagac--aaaagtagtataggtagccacaaatccctactttgtttgagttcaaac |
5662918 |
T |
|
| Q |
218 |
ccaaaactaagaaggcaagagagaagttcaggtatcataatagcctgatcctcttaagttcaagtccaactaatgtcgtaaatatatgataaataaaact |
317 |
Q |
| |
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||||||||||||| |||| |||| |||||| || | ||| || |||||||||||| ||||||| ||||||||||| ||| |||| ||| || ||| |
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| T |
5662917 |
ccaaaactaagaatgcaatagaggagttcatgtgt-ttaagagtttgatcctcttaaattcaagttaaactaatgtcgcaaacctatggcaaaaaatact |
5662819 |
T |
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| Q |
318 |
caacttcaaatagagcaacaagcccaaacaat-aataaaaatagagacatgc |
368 |
Q |
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||| |||| |||||| |||||||| |||| ||||||||| ||||||||| |
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| T |
5662818 |
caatttcagatagag-ttcaagcccagtcaataaataaaaatggagacatgc |
5662768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 368
Target Start/End: Complemental strand, 5664623 - 5664376
Alignment:
| Q |
118 |
atgaattttactatcttactaaactagaaaatcaagtctttgactcaaacataaaaggagtatgggtagccatacgacccgaccctgtatgagttcaaac |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| |||||| ||| |||| | ||| |||||||| | | || || ||| ||||||||||| |
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| T |
5664623 |
atgaattttactatcctactaaactagaaaattcagtctacgactcagaca--aaagtaatataggtagccacaggttcctactttgtttgagttcaaac |
5664526 |
T |
|
| Q |
218 |
ccaaaactaagaaggcaagagagaagttcaggtatcataatagcctgatcctcttaagttcaagtccaactaatgtcgtaaatatatgataaataaaact |
317 |
Q |
| |
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||||||||||||| |||| |||| ||||||||| | ||| || |||||||||||| ||||||| |||||||||| ||| |||| ||| || ||| |
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| T |
5664525 |
ccaaaactaagaatgcaatagaggagttcaggtgt-ttaagagtttgatcctcttaaattcaagttaaactaatgtcccaaacctatggcaaaaaagact |
5664427 |
T |
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| Q |
318 |
caacttcaaatagagcaacaagcccaaacaat-aataaaaatagagacatgc |
368 |
Q |
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||| ||||||||||| |||||||| |||| ||||||||| ||||||||| |
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| T |
5664426 |
caatttcaaatagag-tacaagcccggtcaataaataaaaatggagacatgc |
5664376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 5047598 - 5047666
Alignment:
| Q |
207 |
tgagttcaaacccaaaactaagaaggcaagagagaagttcaggtatcataatagcctgatcctcttaag |
275 |
Q |
| |
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|||||||||||||||||| |||||||||| |||| |||||||||| | ||| |||| |||||||||||| |
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| T |
5047598 |
tgagttcaaacccaaaacaaagaaggcaatagaggagttcaggtagcttaacagcccgatcctcttaag |
5047666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 5046827 - 5046895
Alignment:
| Q |
207 |
tgagttcaaacccaaaactaagaaggcaagagagaagttcaggtatcataatagcctgatcctcttaag |
275 |
Q |
| |
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||||||||||||||||| |||||||||| |||| |||||||||| | ||| |||| |||||||||||| |
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| T |
5046827 |
tgagttcaaacccaaaataaagaaggcaatagaggagttcaggtagcttaacagcccgatcctcttaag |
5046895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 129 - 286
Target Start/End: Complemental strand, 1275812 - 1275654
Alignment:
| Q |
129 |
tatcttactaaactagaaaatca-agtctttgactcaaacataaaaggagtatgggtagccatacgacccgaccctgtatgagttcaaacccaaaactaa |
227 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||||||||| | ||||||||||| |||||||| | || || || | ||||||||||||||||||||| |
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| T |
1275812 |
tatcctactaaactagaaaatccgagtctatgactcaaaaacaaaaggagtataggtagccactaggccatactctatttgagttcaaacccaaaactaa |
1275713 |
T |
|
| Q |
228 |
gaaggcaagagagaagttcaggtatcataatagcctgatcctcttaagttcaagtccaa |
286 |
Q |
| |
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||||| || ||| |||||||||| | ||| ||| |||||| |||||||||||||||| |
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|
| T |
1275712 |
gaaggaaatagaagagttcaggtagcctaacagctcgatcctattaagttcaagtccaa |
1275654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 294
Target Start/End: Original strand, 12738533 - 12738668
Alignment:
| Q |
159 |
gactcaaacataaaaggagtatgggtagccatacgacccgaccctgtatgagttcaaacccaaaactaagaaggcaagagagaagttcaggtatcataat |
258 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| | | || |||| |||||||||||||||||||||||| || |||| | || |||| | ||| |
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| T |
12738533 |
gactcaaacagaaaaggagtataggtagccataaggatctactctgttcgagttcaaacccaaaactaagaagaaaatagaggaatttaggttgcctaac |
12738632 |
T |
|
| Q |
259 |
agcctgatcctcttaagttcaagtccaactaatgtc |
294 |
Q |
| |
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|||| |||||||||||||||| || |||||||||| |
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| T |
12738633 |
agcccgatcctcttaagttcatgtttaactaatgtc |
12738668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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