View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_low_15 (Length: 363)
Name: NF18018_low_15
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32621243 - 32621044
Alignment:
| Q |
1 |
aaattaaaaaactaaatgactattaaaaacattgtgttccaatagcatatgagatatgattacatgaacactaacctaaagttacactataattccaacc |
100 |
Q |
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| T |
32621243 |
aaattaaaaaactaaatgactattaaaaacattgtgttccaatagcatatgggatatgattacatgaacactaacctaaagttacactataattccaacc |
32621144 |
T |
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| Q |
101 |
ttcaccccaactttgtggcacataacattctttgatgaggtagtgaccatctaacttttaatgtgttcatagttttattcaccacccacgtctacaaaca |
200 |
Q |
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| T |
32621143 |
ttca-cccaactttgtggcacataacattctttgatgaggtagtgaccatctaacttttaatgtgttcatagttttattcaccacccacgtctacaaaca |
32621045 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 42861524 - 42861561
Alignment:
| Q |
319 |
tttcccttctttactaggaacagaaaattcattgtgtc |
356 |
Q |
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| T |
42861524 |
tttcccttctttactaggaactgacaattcattgtgtc |
42861561 |
T |
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