View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18018_low_16 (Length: 349)
Name: NF18018_low_16
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 10493036 - 10493346
Alignment:
| Q |
19 |
tttcgtatatcacactatctgaaaatgcacgtgcctacagtggtgcaaggacaaaaagttggttttccaaaggatttatattatgtttcacatgctatat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10493036 |
tttcgtatatcacactatctgaaaatgcacgtgcctacagtggtgcaaggacaaaaagttggttttccaaaggatttatattatgtttcacatgctatat |
10493135 |
T |
|
| Q |
119 |
tatggtatcttagttgagacccatgcaacattccattccattacaaaatgaaatgtatgtgcnnnnnnnagttgagacacatttaggaagttcaaacttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10493136 |
tatggtatcttagttgagacccatgcaacattccattccattacaaaatgaaatgtatgtgctttttttagttgagacacatttaggaagttcaaacttc |
10493235 |
T |
|
| Q |
219 |
aacatcctcacttcaagacaatatgttgataaactatttgtcaaaacaaaaacatctgataaatcttttgctaaatgtaaaaccaaataatatgcatgca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10493236 |
aacatcctcacttcaagacaatatgttgataaactatttgtcaaaacaaaaacatctgataaatc-tttgctaaatgtaaaaccaaataatatgcatgca |
10493334 |
T |
|
| Q |
319 |
aaactccaatgg |
330 |
Q |
| |
|
|||||||||||| |
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| T |
10493335 |
aaactccaatgg |
10493346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 7482129 - 7481824
Alignment:
| Q |
19 |
tttcgtatatcacactatctgaaaatgcacgtgcctacagtggtgcaaggacaaaaagttggttttccaaaggatttatattatgtttcacatgctatat |
118 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
7482129 |
tttcgtatatcacactatctgaacatgcacgtgcctacagtggtgcaaggacaaagagttggttttccaatggatttatattatgtt--acatgctatat |
7482032 |
T |
|
| Q |
119 |
tatggtatcttagttgagacccatgcaacattccattccattacaaaatgaaatgtatgtgcnnnnnnnagttgagacacatttaggaagttcaaacttc |
218 |
Q |
| |
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||||||||||| ||||||||||||||| |||| ||||||||||||||| | | |||||||| ||||||||||||||||||||| ||||||||| |
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| T |
7482031 |
tatggtatcttctttgagacccatgcaaaattctattccattacaaaataatacgtatgtgctttttttagttgagacacatttaggaagctcaaacttc |
7481932 |
T |
|
| Q |
219 |
aacatcct---cacttcaagacaatatgttgataaactatttgtcaaaac-aaaaacatctgataaatcttttgctaaatgtaaaaccaaataatatgca |
314 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||| || ||| |||||| |
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| T |
7481931 |
aacatcctcaacacgtcaagacaatatgttgataaattatttgtcaaaacaaaaaacatctgataaatc-tttgctaaatgcaaaa-cacatattatgca |
7481834 |
T |
|
| Q |
315 |
tgcaaaactc |
324 |
Q |
| |
|
||||||||| |
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|
| T |
7481833 |
agcaaaactc |
7481824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 10488961 - 10489269
Alignment:
| Q |
19 |
tttcgtatatcacactatctgaaaatgcacgtgcctacagtggtgcaaggacaaaaagttggttttccaaaggatttatattatgtttcacatgctatat |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
10488961 |
tttcgtatatcacactatccgaaaatgcaagtgcctacagtggtgcaaggacaaaaaatgggttttccaaatgatttatattatgtttcacatactataa |
10489060 |
T |
|
| Q |
119 |
tatggtatcttagttgagacccatgcaacattccattccattacaaaatgaaatgtatgtgcnnnnnnnagttgagacacatttaggaagttcaaacttc |
218 |
Q |
| |
|
|||||||||||| | |||| | |||||||||| || ||||||||||| || |||||||||| ||||||||||||||||||| | ||||||||| |
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|
| T |
10489061 |
tatggtatcttattcaagacacgtgcaacattctataccattacaaaaggacatgtatgtgctttttttagttgagacacatttaggatgctcaaacttc |
10489160 |
T |
|
| Q |
219 |
aacatcct---cacttcaagacaatatgttgataaactatttgtcaaaacaaaaacatctgataaatcttttgctaaatgtaaaaccaaataatatgcat |
315 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||||||||| ||||||||| |||| |
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|
| T |
10489161 |
aacatcctcaacactttaagacaatatgttgataaactatttgtcaaaacaaaaacatatttgaaatc-ttcgctaaatgtaaagccaaataattagcat |
10489259 |
T |
|
| Q |
316 |
gcaaaactcc |
325 |
Q |
| |
|
|| ||||||| |
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|
| T |
10489260 |
gccaaactcc |
10489269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 7478531 - 7478232
Alignment:
| Q |
19 |
tttcgtatatcacactatctgaaaatgcacgtgcctacagtggtgcaaggacaaaaagttggttttccaaaggatttatattatgtttcacatgctatat |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| | | |||||||| ||||||||||||||||||||| |||||| |
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|
| T |
7478531 |
tttcgtatatcacactatcagaaaatgcatgtgcctacagtggtgcaaagacaaaaaatcgagtttccaaatgatttatattatgtttcacatactatat |
7478432 |
T |
|
| Q |
119 |
tatggtatcttagttgagacccatgcaacattccattccattacaaaatgaaatgtatgtgcnnnnnnnagttgagacacatttaggaagttcaaacttc |
218 |
Q |
| |
|
|||||||||||| | ||||| || ||||||||| || | ||||||||| || |||||||||| |||||| |||||||||||| | ||||||||| |
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|
| T |
7478431 |
tatggtatcttattcgagacacaagcaacattctatacaattacaaaaggacatgtatgtgctgtttttagttgacacacatttaggatgctcaaacttc |
7478332 |
T |
|
| Q |
219 |
aacatcct---cacttcaagacaatatgttgataaactatttgtcaaaacaaaaacatctgataaatcttttgctaaatgtaaaaccaaataatatgcat |
315 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||||||| |
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| T |
7478331 |
aacatcctcaacacttgaagacaatatgttgataaactatttgtcaaaacaaaagaatc----------tttgctaaatgtaaaactacataatatgcat |
7478242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 323
Target Start/End: Original strand, 10474811 - 10475044
Alignment:
| Q |
92 |
atttatattatgtttcacatgctatattatggtatcttagttgagacccatgcaacattccattccattacaaaatgaaatgtatgtgcnnnnnnnagtt |
191 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| | |||||||||||||||||| || |||||| ||||||| |||||||||| |||| |
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|
| T |
10474811 |
atttatattatgtttcacatactatattatgctatcttattcgagacccatgcaacattctataccattagaaaatgacatgtatgtgctatttttagtt |
10474910 |
T |
|
| Q |
192 |
gagacacatttaggaagttcaaacttcaacatcct---cacttcaagacaatatgttgataaactatttgtcaaaacaaaaacatctgataaatcttttg |
288 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| || | ||| | || |
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|
| T |
10474911 |
gagacacgtttaggatgctcaaacttcaacatcctcaacacttgaagacaatatgttgataaactatttatcaaaacaaaaacataggacacatc-tatg |
10475009 |
T |
|
| Q |
289 |
ctaaatgtaaaaccaaataatatgcatgcaaaact |
323 |
Q |
| |
|
||||| ||||||||||||||| | |||||||||| |
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|
| T |
10475010 |
ctaaacgtaaaaccaaataattagtatgcaaaact |
10475044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 10507781 - 10507898
Alignment:
| Q |
210 |
tcaaacttcaacatcctc---acttcaagacaatatgttgataaactatttgtcaaaacaaaaacatctgataaatcttttgctaaatgtaaaaccaaat |
306 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||||| |||| |
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|
| T |
10507781 |
tcaaacttcaacatcctctacacctcaagacaatatgttgataaactatttgttaaaacaaaaacatatgagaaatc-tttgctaaatgtaaaacaaaat |
10507879 |
T |
|
| Q |
307 |
aatatgcatgcaaaactcc |
325 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
10507880 |
aattagtatgcaaaactcc |
10507898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 10463766 - 10463833
Alignment:
| Q |
240 |
tatgttgataaactatttgtcaaaacaaaaacatctgataaatcttttgctaaatgtaaaaccaaataat |
309 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||||||| |
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|
| T |
10463766 |
tatgttgataaactattagtcaaaacaaaaaca--tgagaaaaactttgctaaatgtaaaaccaaataat |
10463833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 10545467 - 10545562
Alignment:
| Q |
233 |
aagacaatatgttgataaactatttgtcaaaacaaaaacat-ctgataaatcttttgctaaatgtaaaaccaaataatatgcatgcaaaactccaatg |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||| | |||| || |||||||||||||||||| | || ||||||||||||| |
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|
| T |
10545467 |
aagacaatatgttgataaactatttgtcaaaacaaaatcatattgat--ttttttttctcaatgtaaaaccaaataattagtattcaaaactccaatg |
10545562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 10545364 - 10545418
Alignment:
| Q |
95 |
tatattatgtttcacatgctatattatggtatcttagttgagacccatgcaacatt |
150 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| || |||||||||||||||||| |
|
|
| T |
10545364 |
tatattatgttttacatactatattatggtatc-tatctgagacccatgcaacatt |
10545418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 10863288 - 10863351
Alignment:
| Q |
245 |
tgataaactatttgtcaaaacaaaaacatctgataaatcttttgctaaatgtaaaaccaaataat |
309 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||| ||||| || ||||||| |||||||||||||| |
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| T |
10863288 |
tgataaactatttgtcaaaagtagaacatatgacaaatc-ttcgctaaatataaaaccaaataat |
10863351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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