View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_low_17 (Length: 348)
Name: NF18018_low_17
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 348
Target Start/End: Original strand, 39400510 - 39400844
Alignment:
| Q |
14 |
cataggggatagtaatatttaaagcagttgtaagaaatgttatgcaacacctcacttttttcatatgtgaagttgtcaatatgacaaggtaaaaatggtg |
113 |
Q |
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| T |
39400510 |
cataagggatagtaatatttaaagcagttgtaagaaatgttatgcaacacctcacttttttcatatgtgaagttgtcaatatgacaaggtaaaaatggtg |
39400609 |
T |
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| Q |
114 |
agagtatttagctgatgtattgatttttgttgatatggttgcaagtggtacgctgaaagatcggtcaaagcccataatattctccatggcaaggctagac |
213 |
Q |
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| T |
39400610 |
agagtatttagctgatgtgttgatttttgttgatatggttgcaagtggtacgctgaaagatcggtcaaagcccataatattctccatggcaaggctagac |
39400709 |
T |
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| Q |
214 |
cgagtgaaaaacattaccgggttggtagaaatctatggtaagaacagcaaactaagagaactggtcaaccttgttgtagtagctggttacattgatgtaa |
313 |
Q |
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| T |
39400710 |
cgagtgaaaaacattaccgggttggtagaaatctatggtaagaacagcaaactaagagaactggtcaaccttgttgtagtagctggttacattgatgtaa |
39400809 |
T |
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| Q |
314 |
gtaagtccagggacagagaagaaatagctgaaatt |
348 |
Q |
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| T |
39400810 |
gtaagtccagggacagagaagaaatagctgaaatt |
39400844 |
T |
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Back To:
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Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 175 - 338
Target Start/End: Complemental strand, 44515309 - 44515146
Alignment:
| Q |
175 |
cggtcaaagcccataatattctccatggcaaggctagaccgagtgaaaaacattaccgggttggtagaaatctatggtaagaacagcaaactaagagaac |
274 |
Q |
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| T |
44515309 |
cggtcaaagcctataatcttctccatggcaaggcttgacagagttaaaaacataactggtttggtagaaagctatgctaagaacagcaaattgagggaac |
44515210 |
T |
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| Q |
275 |
tggtcaaccttgttgtagtagctggttacattgatgtaagtaagtccagggacagagaagaaat |
338 |
Q |
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| T |
44515209 |
tggtcaaccttgtcgtagtagctggttatattgatgtgaagaagtccagtgacagagaagaaat |
44515146 |
T |
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