View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_low_24 (Length: 262)
Name: NF18018_low_24
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_low_24 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 34694237 - 34694479
Alignment:
| Q |
20 |
ggtctgaccttattcacacattcaagcaaatctaacccataaaaaattagttatggaaatatcataatactccatggttcatacagtgtaatgaatatct |
119 |
Q |
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| T |
34694237 |
ggtctgaccttattcacacattcaagcaaatctaacccataaaaaattagttatagaaatatcataatactccatggttcatacaatgtaatgaatatct |
34694336 |
T |
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| Q |
120 |
ttcggtcaattttataatttgtaaactttacatgtttgatcggcttacgacaaatattttttaggtggagatgatgaagaaataactcctggaccaagac |
219 |
Q |
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| T |
34694337 |
ttcggtcaattttataatttgtaaactttgcatgtttgatcggcttacgacaaatattttttaggtggagatgatgaagaaataactcctggaccaaggc |
34694436 |
T |
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| Q |
220 |
caagatggatcccaaaacctgagcaaatccgcattcttcaagc |
262 |
Q |
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| T |
34694437 |
caagatggatcccaaaacctgagcaaatccacattcttgaagc |
34694479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 31 - 262
Target Start/End: Original strand, 34686324 - 34686547
Alignment:
| Q |
31 |
attcacacattcaagcaaatctaacccataaaaaattagttatggaaatatcataatactccatggttcatacagtgtaatgaatatctttcggtcaatt |
130 |
Q |
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| T |
34686324 |
attcacacattcaagcaactataacccataaaaaaatagttctagaaatatcataatac--catgcttcatagagtgtaatgcatatattttggtcaatt |
34686421 |
T |
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| Q |
131 |
ttataatttgtaaactttacatgtttgatcggcttacgacaaatattttttaggtggagatgatgaagaaataactcctggaccaagaccaagatggatc |
230 |
Q |
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| T |
34686422 |
taataatttgtaaactttgcatgtttgatcggcttataacaaatattgtttagg------cgatgaagatagaaatcctggaccaaggccaagatggatt |
34686515 |
T |
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| Q |
231 |
ccaaaacctgagcaaatccgcattcttcaagc |
262 |
Q |
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| T |
34686516 |
ccaaagcctgagcaaatccgcattcttgaagc |
34686547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 256
Target Start/End: Original strand, 8284213 - 8284399
Alignment:
| Q |
70 |
ttatggaaatatcataatactccatggttcatacagtgtaatgaatatctttcggtcaattttataatttgtaaactttacatgtttgatcggcttacga |
169 |
Q |
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| T |
8284213 |
ttatagaaatatcataatactccctagtttatacaatataatgaacatctattagtaaattttagaatttgtaaacttagcatgttcgattgacttataa |
8284312 |
T |
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| Q |
170 |
caaatattttttaggtggagatgatgaagaaataactcctggaccaagaccaagatggatcccaaaacctgagcaaatccgcattct |
256 |
Q |
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| T |
8284313 |
caaatattgtttaggtggagatggcgaagagagaactccagaaccaaagccaagatggaacccaaaaccacaacaaattcgcattct |
8284399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 5623 - 5709
Alignment:
| Q |
169 |
acaaatattttttaggtggagatgatgaagaaataactcctggaccaagaccaagatggatcccaaaacctgagcaaatccgcattct |
256 |
Q |
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| T |
5623 |
acaaatattgtttaggtggagatgctgaagagagaacttctcaacaaag-ccaagatggaatccaaagcttgagcaaatccgcattct |
5709 |
T |
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