View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18018_low_3 (Length: 637)

Name: NF18018_low_3
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18018_low_3
NF18018_low_3
[»] chr3 (3 HSPs)
chr3 (34-614)||(34760908-34761488)
chr3 (565-614)||(25447298-25447347)
chr3 (452-516)||(44014714-44014778)
[»] chr1 (3 HSPs)
chr1 (545-614)||(9572142-9572211)
chr1 (569-613)||(3495693-3495737)
chr1 (565-614)||(48830130-48830179)
[»] chr7 (3 HSPs)
chr7 (501-584)||(25422347-25422431)
chr7 (565-614)||(20526413-20526462)
chr7 (565-614)||(22283798-22283847)
[»] chr6 (2 HSPs)
chr6 (544-614)||(1402963-1403033)
chr6 (565-614)||(2735036-2735085)
[»] chr8 (3 HSPs)
chr8 (373-406)||(29356723-29356756)
chr8 (452-516)||(16162850-16162914)
chr8 (532-588)||(29592194-29592250)
[»] chr5 (1 HSPs)
chr5 (565-614)||(26516367-26516416)
[»] chr4 (2 HSPs)
chr4 (562-611)||(28300350-28300399)
chr4 (468-551)||(7367986-7368070)
[»] chr2 (1 HSPs)
chr2 (569-613)||(44439418-44439462)


Alignment Details
Target: chr3 (Bit Score: 569; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 34 - 614
Target Start/End: Complemental strand, 34761488 - 34760908
Alignment:
Q  34 ttagaattagaatggaagcaaaggaatactcagtttccttgaaaagacataggaaagaaccatattttgtagcacaccacacaaaaagacaacaccatat 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34761488 ttagaattagaatggaagcaaaggaatactcagtttccttgaaaagacataggaaagaaccatattttgtagcacaccacacaaaaagacaacaccatat 34761389  T
Q  134 tgcctcaaaacaagcatgtacacacaaccattctctcatattgtccacttctcaaaacactccatctatgctacctgtttttgtttctttgttgttactt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34761388 tgcctcaaaacaagcatgtacacacaaccattctctcatattgtccacttctcaaaacactccacctatgctacctgtttttgtttctttgttgttactt 34761289  T
Q  234 cttcttacttcaactactccagcattgtctcatcactctattgtctcagattctatccacccctcgaagactaaccagacttataaagcaggttcagagt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34761288 cttcttacttcaactactccagcattgtctcatcactctattgtctcagattctatccacccctcgaagactaaccagacttataaagcaggttcagagt 34761189  T
Q  334 tgcttaagttaagaagaatcagaactcacctcatgaaaatcaataagcctgctgtgaagacaattcaggcatgcatttttcttttctctataaccagtgg 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34761188 tgcttaagttaagaagaatcagaactcacctcatgaaaatcaataagcctgctgtgaagacaattcaggcatgcatttttcttttctctataaccagtgg 34761089  T
Q  434 cagtgttactgatattttgcctctttggattagattatttgagtttatatactgtcgtaaacattcgtgagactgtttgagaaggtcatggaaacaattt 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34761088 cagtgttactgatattttgcctctttggattagattatttgagtttatatactgtcgtaaacattcgtgagactgtttgagaaggtcatggaaacaattt 34760989  T
Q  534 atgacatgtttataagctctcagtgatcgcctatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  34760988 atgacatgtttataagctctcagtgatcgcctatgaaaacagtttatagcttatataaacatagtttaactttattttatc 34760908  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 614
Target Start/End: Original strand, 25447298 - 25447347
Alignment:
Q  565 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 614  Q
    ||||||||||||||||||||||||||||   | ||||| |||||||||||    
T  25447298 tatgaaaacagtttatagcttatacaaaaacaatttaagtttattttatc 25447347  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 516
Target Start/End: Original strand, 44014714 - 44014778
Alignment:
Q  452 gcctctttggattagattatttgagtttatatactgtcgtaaacattcgtgagactgtttgagaa 516  Q
    |||| |||||||| | |||||||||||||| ||||  | |||||| | |||||||||||||||||    
T  44014714 gcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaa 44014778  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 545 - 614
Target Start/End: Original strand, 9572142 - 9572211
Alignment:
Q  545 ataagctctcagtgatcgcctatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 614  Q
    ||||| ||||| |||| || ||||||||| | |||||||||||||||| | | |||||||||||||||||    
T  9572142 ataagttctcaatgatggcatatgaaaacggcttatagcttatacaaaagcaatttaactttattttatc 9572211  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 613
Target Start/End: Original strand, 3495693 - 3495737
Alignment:
Q  569 aaaacagtttatagcttatacaaacgtagtttaactttattttat 613  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||||    
T  3495693 aaaacaatttataggttatacaaacgtaatttaactttattttat 3495737  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 614
Target Start/End: Original strand, 48830130 - 48830179
Alignment:
Q  565 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 614  Q
    ||||||||||||||||||||||||  ||  |||||| |||||||||||||    
T  48830130 tatgaaaacagtttatagcttatatgaaaatagtttgactttattttatc 48830179  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 584
Target Start/End: Complemental strand, 25422431 - 25422347
Alignment:
Q  501 tgagactgtttgaga-aggtcatggaaacaatttatgacatgtttataagctctcagtgatcgcctatgaaaacagtttatagct 584  Q
    |||||||||||| || || | |||||||||  ||||||||||||||||| |||||  |||| |||| |||||||| |||||||||    
T  25422431 tgagactgtttgggagagcttatggaaacaccttatgacatgtttataaactctccatgatagcctgtgaaaacaatttatagct 25422347  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 614
Target Start/End: Complemental strand, 20526462 - 20526413
Alignment:
Q  565 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 614  Q
    ||||||||||| ||||||| | ||||||| || |||||||||||||||||    
T  20526462 tatgaaaacagcttatagcatgtacaaacataatttaactttattttatc 20526413  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 614
Target Start/End: Original strand, 22283798 - 22283847
Alignment:
Q  565 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 614  Q
    |||||||||||||||||||| |||||||   | |||||||||||||||||    
T  22283798 tatgaaaacagtttatagctgatacaaaaacaatttaactttattttatc 22283847  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 614
Target Start/End: Complemental strand, 1403033 - 1402963
Alignment:
Q  544 tataagctctcagtgatcgcctatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 614  Q
    |||||| ||||  |||| || |||||||||| |||||||||||||  ||  ||||||||||||||||||||    
T  1403033 tataagatctccatgatagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatc 1402963  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 614
Target Start/End: Complemental strand, 2735085 - 2735036
Alignment:
Q  565 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 614  Q
    ||||||||||| |||||| |||||||||  || |||||||||||||||||    
T  2735085 tatgaaaacagcttatagattatacaaaaataatttaactttattttatc 2735036  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 29356723 - 29356756
Alignment:
Q  373 tcaataagcctgctgtgaagacaattcaggcatg 406  Q
    |||||||||||||||| |||||||||||||||||    
T  29356723 tcaataagcctgctgttaagacaattcaggcatg 29356756  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 516
Target Start/End: Complemental strand, 16162914 - 16162850
Alignment:
Q  452 gcctctttggattagattatttgagtttatatactgtcgtaaacattcgtgagactgtttgagaa 516  Q
    |||| |||||||| | |||||||||||||| ||||  | |||||| | |||||||||||||||||    
T  16162914 gcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaa 16162850  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 588
Target Start/End: Original strand, 29592194 - 29592250
Alignment:
Q  532 ttatgacatgtttataagctctcagtgatcgcctatgaaaacagtttatagcttata 588  Q
    |||||||||||  |||||||||| | ||| || ||||||||||| ||||||||||||    
T  29592194 ttatgacatgtccataagctctctgggatagcttatgaaaacagattatagcttata 29592250  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 614
Target Start/End: Complemental strand, 26516416 - 26516367
Alignment:
Q  565 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 614  Q
    ||||||||||||||||| ||||||  || ||||||| |||||||||||||    
T  26516416 tatgaaaacagtttataacttatatgaaagtagtttgactttattttatc 26516367  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 611
Target Start/End: Original strand, 28300350 - 28300399
Alignment:
Q  562 gcctatgaaaacagtttatagcttatacaaacgtagtttaactttatttt 611  Q
    ||||||||||| |||||||||||||||||||   | ||||||||||||||    
T  28300350 gcctatgaaaatagtttatagcttatacaaaaacaatttaactttatttt 28300399  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 551
Target Start/End: Original strand, 7367986 - 7368070
Alignment:
Q  468 ttatttgagtttatatactgtcgtaaacattcgtgagactgtttgaga-aggtcatggaaacaatttatgacatgtttataagct 551  Q
    |||||||||||||| ||| | | |||||  | ||||||||||||| || || ||||| |||||  ||||||||||||||||||||    
T  7367986 ttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttatgacatgtttataagct 7368070  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 613
Target Start/End: Original strand, 44439418 - 44439462
Alignment:
Q  569 aaaacagtttatagcttatacaaacgtagtttaactttattttat 613  Q
    |||||| |||||||||||||||||   ||||||||||||||||||    
T  44439418 aaaacaatttatagcttatacaaaaacagtttaactttattttat 44439462  T

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