View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_low_32 (Length: 208)
Name: NF18018_low_32
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 53043899 - 53044091
Alignment:
| Q |
1 |
cggtattgttgagcatttgttaggagtgttaatgattattgggtttctgctggttaaaaacaggaactagtcagtagcaccaatcgaccaaaatcccaga |
100 |
Q |
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| T |
53043899 |
cggtattgttgagcatttgttaggagtgttaatgattattgggtttctgctggttaaaaacaggaactagtcagtagcaccaatcgaccaaaatcccaga |
53043998 |
T |
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| Q |
101 |
taatctgcgtaatggaaggatttgaaacagtgatgttcaggtccaaatttgattcttggcctcagacaactaatgcagcaatgcctgaagatg |
193 |
Q |
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| T |
53043999 |
taatccgcgtaatggaaggatttgaaacagtgatgttcaggtccaaatttgattcttggcctcagacaactaatgcagcaatgcctgaagatg |
53044091 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 15963178 - 15963120
Alignment:
| Q |
109 |
gtaatggaaggatttgaaacagtgatgttcaggtccaaatttgattcttggcctcagac |
167 |
Q |
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| T |
15963178 |
gtaattgaaggatttgaaacagtgttgtttaagtccaagtttgattcttggcctcagac |
15963120 |
T |
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