View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18018_low_5 (Length: 571)

Name: NF18018_low_5
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18018_low_5
NF18018_low_5
[»] chr3 (3 HSPs)
chr3 (8-553)||(8102315-8102860)
chr3 (367-545)||(40147438-40147616)
chr3 (13-293)||(40147090-40147370)
[»] chr4 (11 HSPs)
chr4 (384-550)||(7656227-7656393)
chr4 (383-541)||(7606108-7606266)
chr4 (383-545)||(7636932-7637094)
chr4 (369-545)||(7615118-7615294)
chr4 (465-545)||(7628556-7628636)
chr4 (111-239)||(7615418-7615546)
chr4 (112-238)||(7655961-7656087)
chr4 (106-239)||(7628789-7628922)
chr4 (13-238)||(7637236-7637461)
chr4 (13-164)||(7606479-7606630)
chr4 (370-440)||(39070932-39071002)
[»] chr7 (6 HSPs)
chr7 (369-545)||(8936167-8936343)
chr7 (383-541)||(8941826-8941983)
chr7 (410-545)||(8913705-8913840)
chr7 (111-316)||(8935924-8936129)
chr7 (111-218)||(8910985-8911092)
chr7 (126-164)||(8938715-8938753)
[»] chr6 (4 HSPs)
chr6 (372-537)||(6500375-6500540)
chr6 (112-246)||(6500647-6500781)
chr6 (479-548)||(11968792-11968861)
chr6 (130-171)||(11969168-11969209)
[»] chr8 (3 HSPs)
chr8 (469-550)||(15196335-15196416)
chr8 (383-427)||(15745030-15745074)
chr8 (151-231)||(15196011-15196091)
[»] scaffold0190 (2 HSPs)
scaffold0190 (479-550)||(4319-4390)
scaffold0190 (383-440)||(4435-4492)


Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 553
Target Start/End: Complemental strand, 8102860 - 8102315
Alignment:
Q  8 cgaagaaaatatcttcccttcaagcactttttgcacacctttggtgctcagtgatccgttccgaccaattagagccacaagagaacgcatattttatggt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8102860 cgaacaaaatatcttcccttcaagcactttttgcacacctttggtgctcagtgatccgttccgaccaattagacccacaagagaacgcatattttatggt 8102761  T
Q  108 cgggataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102760 cgggataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttg 8102661  T
Q  208 ttggaagaaggcgggcttggtaaatgtgcttggaagatgcacgaaacgatttctttgcactcaaatgagaagttgaagaatgactatgagaattgggtga 307  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8102660 ttggaagaaggcgggtttggtaaatgtgcttggaagatgcacgaaacgatttgtttgcactcaaatgagaagttgaagaatgactatgagaattgggtga 8102561  T
Q  308 gaaatccaatcatctatagacttggtgatagtaacgttgccgattatcatgtgatggctagtagcagttcccagaggtttgatgtttatggcaataattt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  8102560 gaaatccaatcatctatagacttggtgatagtaacgttgccgattatcatgtgttggctagtagcagttcccagtggtttgatgtttatggcaataattt 8102461  T
Q  408 tggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggtagtatggaccttcaagta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102460 tggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggtagtatggaccttcaagta 8102361  T
Q  508 tgtcttcctcacaagattttggaggcaatgggaaatgatcctgttt 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8102360 tgtcttcctcacaagattttggaggcaatgggaaatgatcctgttt 8102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 367 - 545
Target Start/End: Original strand, 40147438 - 40147616
Alignment:
Q  367 agtagcagttcccagaggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctg 466  Q
    ||||||| ||||| | |||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||||||  ||||||| || || |||    
T  40147438 agtagcaattccccgtggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactg 40147537  T
Q  467 tatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 545  Q
    |||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  40147538 tatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatga 40147616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 40147090 - 40147370
Alignment:
Q  13 aaaatatcttcccttcaagcactttttgcacacctttggtgctcagtgatccgttccgaccaattagagccacaagagaacgcatattttatggtcggga 112  Q
    |||||||| ||||| ||| |||||||| |||| |||||| |||| |||||||||||| | ||||| || ||||| ||  | |  |||| |||||||| ||    
T  40147090 aaaatatcatccctccaatcactttttacacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcga 40147189  T
Q  113 taggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttgga 212  Q
    |||||| ||||  ||||||||||||||||||||| ||||||||||||||||||||||||| || || || |||| |||||||||  || |||||||||||    
T  40147190 taggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttgga 40147289  T
Q  213 agaaggcgggcttggtaaatgtgcttggaagatgcacgaaacgatttctttgcactcaaatgagaagttgaagaatgacta 293  Q
    ||| || |||||||||||| ||||||||  ||| ||| ||| |||||||||||| ||||||||  ||||||||||| ||||    
T  40147290 agatggtgggcttggtaaaggtgcttgggcgatacacaaaatgatttctttgcagtcaaatgaagagttgaagaatcacta 40147370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 384 - 550
Target Start/End: Original strand, 7656227 - 7656393
Alignment:
Q  384 gtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaa 483  Q
    ||||||||||||||| ||| |||||||||||||||| || ||||||||||| ||||||||||||  || |||| || ||  ||  |||||||||||||||    
T  7656227 gtttgatgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaacaaatggaatggtttgtgcctttgctggaatagaa 7656326  T
Q  484 gaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctg 550  Q
    |||| ||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  7656327 gaagctagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcctg 7656393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 383 - 541
Target Start/End: Complemental strand, 7606266 - 7606108
Alignment:
Q  383 ggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaataga 482  Q
    |||||||||||||||| ||| |||| ||||||||||||||  | |||||||| |||||| |||||  || |||| |  |   ||||||||||||||||||    
T  7606266 ggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaataga 7606167  T
Q  483 agaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa 541  Q
    |||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  7606166 agaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaa 7606108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 383 - 545
Target Start/End: Complemental strand, 7637094 - 7636932
Alignment:
Q  383 ggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaataga 482  Q
    |||||||||||||||| ||| |||||||||||||||| ||  |||||||||| |||||| |||||  || ||||||  || | |||||||| ||||||||    
T  7637094 ggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaataga 7636995  T
Q  483 agaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 545  Q
    |||||||||||| ||||||||||| ||||||||||   |||||||||||| ||||||||||||    
T  7636994 agaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatga 7636932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 369 - 545
Target Start/End: Complemental strand, 7615294 - 7615118
Alignment:
Q  369 tagcagttcccagaggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgta 468  Q
    ||||||||| | | |||||||||||||||| ||| ||||||| |||||||| || ||||||||||| |||||| |||||  || ||||||  || | ||     
T  7615294 tagcagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatataaaggaaatggacttattacggtt 7615195  T
Q  469 tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 545  Q
    |||||||||||||||||||||||||| || |||||||| |||||| | ||  |||||||||||||||||||||||||    
T  7615194 tttgctggaatagaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatga 7615118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 465 - 545
Target Start/End: Complemental strand, 7628636 - 7628556
Alignment:
Q  465 tgtatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 545  Q
    |||||||||||||||||||||||||||||| ||||||||| | ||||||||| || |||||||||||||||||||||||||    
T  7628636 tgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga 7628556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 7615546 - 7615418
Alignment:
Q  111 gataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttg 210  Q
    |||||||||| ||| |||||| ||||||||||| || ||| ||||||||||||||||  || ||  || |||||||  ||||||||||||||||||| ||    
T  7615546 gataggagttcgaccaaggttagttccaccattaccagaatattattttggaaatgcacttataagttgtatggttaaaatgaaagttggggagttggtg 7615447  T
Q  211 gaagaaggcgggcttggtaaatgtgcttg 239  Q
    |||||||| || ||| ||||| |||||||    
T  7615446 gaagaaggtggactttgtaaaggtgcttg 7615418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 7655961 - 7656087
Alignment:
Q  112 ataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttgg 211  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||| ||  || ||| ||    | ||  |||||||||||||||||||||||    
T  7655961 ataggagttagaccaagacttgttccaccattgccggaagattattttggaaacgcgattataggttgcgggtttaaaatgaaagttggggagttgttgg 7656060  T
Q  212 aagaaggcgggcttggtaaatgtgctt 238  Q
    | ||||| ||| |||||||| ||||||    
T  7656061 aggaaggtgggattggtaaaggtgctt 7656087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 7628922 - 7628789
Alignment:
Q  106 gtcgggataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagt 205  Q
    |||| |||||||||||||| |||| || |||||||||| || ||||||||||||||||||||  || ||  || |||||||  |||||||| || ||| |    
T  7628922 gtcgcgataggagttagaccaaggcttattccaccattaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctgaggaat 7628823  T
Q  206 tgttggaagaaggcgggcttggtaaatgtgcttg 239  Q
    ||||||| ||||| || ||| ||||| |||||||    
T  7628822 tgttggaggaaggtggactttgtaaaggtgcttg 7628789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 7637461 - 7637236
Alignment:
Q  13 aaaatatcttcccttcaagcactttttgcacacctttggtgctcagtgatccgttccgaccaattagagccacaagagaacgcatattttatggtcggga 112  Q
    ||||||||||| || |||||||||||  | ||| |||||||||  |||| ||||| | | ||||| || ||||||||  | | || |  ||  |||| ||    
T  7637461 aaaatatcttctctacaagcacttttaactcacgtttggtgctatgtgacccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgtga 7637362  T
Q  113 taggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttgga 212  Q
    |||||||| ||| |||||| |||||||| || || ||||||||||||||||||||  || ||  || |||||||  |||||||| |||||| ||||||||    
T  7637361 taggagttcgaccaaggttagttccaccgttaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttgga 7637262  T
Q  213 agaaggcgggcttggtaaatgtgctt 238  Q
     ||||| || ||| ||||| ||||||    
T  7637261 ggaaggtggactttgtaaaggtgctt 7637236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 7606630 - 7606479
Alignment:
Q  13 aaaatatcttcccttcaagcactttttgcacacctttggtgctcagtgatccgttccgaccaattagagccacaagagaacgcatattttatggtcggga 112  Q
    |||||| |||| || ||||| |||||  | |||||||||||||| ||  |||||||| | ||||| || | ||||||  | | ||||  | | |||| ||    
T  7606630 aaaataacttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaagaagaagtatataatctagtcgtga 7606531  T
Q  113 taggagttagacaaaggtttgttccaccattgccggaagattattttggaaa 164  Q
    |||||||| ||| |||||||||||||||||| || |||||||||||||||||    
T  7606530 taggagttggaccaaggtttgttccaccattaccagaagattattttggaaa 7606479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 370 - 440
Target Start/End: Complemental strand, 39071002 - 39070932
Alignment:
Q  370 agcagttcccagaggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtgg 440  Q
    |||||||| | |||||||||||||| ||||||| ||||||| |||||||| |||||||| ||||| |||||    
T  39071002 agcagttctccgaggtttgatgtttttggcaatgattttggctggggaaagccagtggcggttcgaagtgg 39070932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 369 - 545
Target Start/End: Original strand, 8936167 - 8936343
Alignment:
Q  369 tagcagttcccagaggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgta 468  Q
    ||||||||| | | |||||||||||||||| ||| |||||||||||||||| || || |||| |||  ||||| |||||  || ||||||  || | |||    
T  8936167 tagcagttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatataaagcaaatggacttattacagta 8936266  T
Q  469 tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 545  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||||||  |  |||||||||||||||||||||||||    
T  8936267 tttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatga 8936343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 383 - 541
Target Start/End: Original strand, 8941826 - 8941983
Alignment:
Q  383 ggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaataga 482  Q
    |||||||||||||||| ||| |||| ||||||||||||||  | ||||| || |||||| |||||  || |||| |  |   ||||||||||||||||||    
T  8941826 ggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagt-cgtagtggatataaaataaatggaattgtaaatgtatttgctggaataga 8941924  T
Q  483 agaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa 541  Q
    |||||||||||| ||||||||||||||||||||| || || ||||||||||||||||||    
T  8941925 agaaggtagtattgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaa 8941983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 410 - 545
Target Start/End: Original strand, 8913705 - 8913840
Alignment:
Q  410 gatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggtagtatggaccttcaagtatg 509  Q
    |||||||||| || ||||||||||| |||||| |||||  || ||||||  || | |||||||  |||||||||||||||| ||| ||||||||||| ||    
T  8913705 gatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttg 8913804  T
Q  510 tcttcctcacaagattttggaggcaatgggaaatga 545  Q
    ||||||||   |||||||||||| ||||||||||||    
T  8913805 tcttcctcgtgagattttggagggaatgggaaatga 8913840  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 316
Target Start/End: Original strand, 8935924 - 8936129
Alignment:
Q  111 gataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttg 210  Q
    |||||||||| ||| |||||| ||||||||||| || ||| |||||||||||||||| ||| ||  || |||||||  ||||| || |||||||||||||    
T  8935924 gataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgcagttataagttgtatggttaaaatgacagctggggagttgttg 8936023  T
Q  211 gaagaaggcgggcttggtaaatgtgcttggaagatgcacgaaacgatttctttgcactcaaatgagaagttgaagaatgactatgagaattgggtgagaa 310  Q
     | ||||| || ||| ||||| |||||||  ||||| || |    ||| |||| ||| |  ||||||||||||||||| ||||||||  |||| | ||||    
T  8936024 aaggaaggtggactttgtaaaggtgcttgtgagatgaacaagttaattgctttacacactgatgagaagttgaagaatcactatgagtcttggttaagaa 8936123  T
Q  311 atccaa 316  Q
    ||||||    
T  8936124 atccaa 8936129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 8910985 - 8911092
Alignment:
Q  111 gataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttg 210  Q
    |||||||||| ||| |||||| ||||||||||| || ||| ||||||||||||||||  |||||  || |||||||  |||||||||||||||| |||||    
T  8910985 gataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgcaattgtaagttgtatggttaaaatgaaagttggggagctgttg 8911084  T
Q  211 gaagaagg 218  Q
    || |||||    
T  8911085 gaggaagg 8911092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 8938715 - 8938753
Alignment:
Q  126 aaggtttgttccaccattgccggaagattattttggaaa 164  Q
    |||||||||||||||||| || |||||||||||||||||    
T  8938715 aaggtttgttccaccattaccagaagattattttggaaa 8938753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 372 - 537
Target Start/End: Complemental strand, 6500540 - 6500375
Alignment:
Q  372 cagttcccagaggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtattt 471  Q
    |||||||| | |||||||| ||||||| ||| ||||||||||||| ||||| |||||| ||||||||| |||||||  |  |||  || ||  |||||||    
T  6500540 cagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtattt 6500441  T
Q  472 gctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatg 537  Q
    ||||||| |||| |||||||||| ||||||||||| ||||||||| |||||| |||||| ||||||    
T  6500440 gctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatg 6500375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 246
Target Start/End: Complemental strand, 6500781 - 6500647
Alignment:
Q  112 ataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttgg 211  Q
    ||||| ||||||| |||| ||||||||| ||| ||  ||||||||||||||||||||||  ||| || || ||||   ||||||| ||| ||||||||||    
T  6500781 ataggcgttagaccaaggcttgttccactattaccacaagattattttggaaatgctgtgatagattgtagggttagcatgaaagctggtgagttgttgg 6500682  T
Q  212 aagaaggcgggcttggtaaatgtgcttggaagatg 246  Q
    ||||||||||| |||||||| |||||||| |||||    
T  6500681 aagaaggcgggattggtaaaggtgcttgggagatg 6500647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 548
Target Start/End: Complemental strand, 11968861 - 11968792
Alignment:
Q  479 tagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcc 548  Q
    |||||||||||||||| ||| || |||| ||||||||| |||||||||||||||| |||  |||||||||    
T  11968861 tagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttggaggccatgaaaaatgatcc 11968792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 11969209 - 11969168
Alignment:
Q  130 tttgttccaccattgccggaagattattttggaaatgctgtt 171  Q
    |||||| ||||||| ||||| |||||||||||||||||||||    
T  11969209 tttgtttcaccattaccggaggattattttggaaatgctgtt 11969168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 469 - 550
Target Start/End: Original strand, 15196335 - 15196416
Alignment:
Q  469 tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctg 550  Q
    |||||||| | ||||||||| ||||||||| || |||| ||||||||  |||||||||||||||  ||||||||||| ||||    
T  15196335 tttgctggtaaagaagaaggaagtatggactttgaagtgtgtcttccatacaagattttggaggtcatgggaaatgaccctg 15196416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 15745030 - 15745074
Alignment:
Q  383 ggtttgatgtttatggcaataattttggatggggaaaaccagtgg 427  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||    
T  15745030 ggtttgatgtttatggcaatgattttggttggggaaaacctgtgg 15745074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 15196011 - 15196091
Alignment:
Q  151 gattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttggaagaaggcgggcttggtaaa 231  Q
    |||||||||||||||||| |  ||| || |  |||| ||||||||||  ||||| | || |||||||||||||||||||||    
T  15196011 gattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggcttggtaaa 15196091  T

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Target: scaffold0190 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 550
Target Start/End: Complemental strand, 4390 - 4319
Alignment:
Q  479 tagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctg 550  Q
    ||||||| ||||| ||||||||| ||||||||||||||    | ||||||||||||||  ||||||||||||    
T  4390 tagaagatggtagcatggaccttgaagtatgtcttccttgtgaaattttggaggcaattagaaatgatcctg 4319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 4492 - 4435
Alignment:
Q  383 ggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtgg 440  Q
    |||||||||||||||| ||| ||||||| ||||||||||| ||||  ||||| |||||    
T  4492 ggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgg 4435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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