View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_low_6 (Length: 554)
Name: NF18018_low_6
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 5 - 522
Target Start/End: Original strand, 27195325 - 27195842
Alignment:
| Q |
5 |
atctctgagattgagggaaagacagttggtttgcacttctttacgatttcatacaaaccatgcacactatttaatcaaaagctaaaggaggtttacaaaa |
104 |
Q |
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||||||||| ||||||||||||||||||||||||| |||| | ||| |||||||| | ||||||| ||||||| ||||||||| |||||||||||||| | |
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| T |
27195325 |
atctctgagcttgagggaaagacagttggtttgcatttctgtgcgacttcatacagagcatgcacgctatttactcaaaagcttaaggaggtttacaaga |
27195424 |
T |
|
| Q |
105 |
agctgaaggaaaatgggcagaactttgagatcgtctttatacccttagatgatgaagaagagtcattcaagaaagaattagaaagtgtgccttggttatc |
204 |
Q |
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| T |
27195425 |
agctgaaggaaaatggggagaactttgaggtcgtgtttatacctttagatgatgaggaagatgcattcaagaaagaattagaaagtgcgccttggttatc |
27195524 |
T |
|
| Q |
205 |
cttgcctctcaaggacaaaacctgtgcgaaactaattcaatactttgagctatcagaactccccaccttggttattattgggccagatgggaaaactctt |
304 |
Q |
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| T |
27195525 |
cttgcctctcaaggacaaaacctgtgcgaaattaattcagtactttgagctatcagaactccccaccttggttattattgggccagatgggaaaactctt |
27195624 |
T |
|
| Q |
305 |
catcctaatgccgctgaggccattgaggatcacggggttgatgcgtatccattcactcctgaaaagttttctgaacttgatgaaatagcaaaggccaagg |
404 |
Q |
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| T |
27195625 |
catcctaatgccgctgaggccattgaggatcatggggttgatgcgtatccattcactcctgaaaagttttctgaactcgatgaaatagcaaaggccaagg |
27195724 |
T |
|
| Q |
405 |
aggcatctcaaacacttgagtccgttttggtgtctggcgatcgagattttatcattgacaaagatgcgaagaaggtaatatatcttacagcataaattta |
504 |
Q |
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| T |
27195725 |
aggcatctcaaacacttgagtccgttttggtgtctggcgatcaagattttgtcattgacaaagacgggaagaaggtaatatatcttacaagataaattca |
27195824 |
T |
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| Q |
505 |
ctggatttggttaagtga |
522 |
Q |
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| T |
27195825 |
ctcgattttgttgagtga |
27195842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 491
Target Start/End: Original strand, 27210567 - 27211053
Alignment:
| Q |
5 |
atctctgagattgagggaaagacagttggtttgcacttctttacgatttcatacaaaccatgcacactatttaatcaaaagctaaaggaggtttacaaaa |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| | |
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| T |
27210567 |
atctctgagattgagggaaagacagttggtttgcatttctttacgacttcatacaaaccatgcgtgctatttaatcaaaagcttaaggaggtttacaaca |
27210666 |
T |
|
| Q |
105 |
agctgaaggaaaatgggcagaactttgagatcgtctttatacccttagatgatgaagaagagtcattcaagaaagaattagaaagtgtgccttggttatc |
204 |
Q |
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| T |
27210667 |
acctgaaggaaaatggggagaactttgaggtcgtgtttatacccttagatgatgaggaagagtcattcaagaaagaattagaaagcgtgccttggttatc |
27210766 |
T |
|
| Q |
205 |
cttgcctctcaaggacaaaacctgtgcgaaactaattcaatactttgagctatcagaactccccaccttggttattattgggccagatgggaaaactctt |
304 |
Q |
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||||||||||||||||||||| ||| ||||||| || | ||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||| |
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| T |
27210767 |
cttgcctctcaaggacaaaacttgtttgaaactagttaagtactttgagctatcaacactcccctcctttgttgttattgggccagatgggaaaactctt |
27210866 |
T |
|
| Q |
305 |
catcctaatgccgctgaggccattgaggatcacggggttgatgcgtatccattcactcctgaaaagttttctgaacttgatgaaatagcaaaggccaagg |
404 |
Q |
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||||||||||||||||| |||||||||||||| ||| | || || |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27210867 |
catcctaatgccgctgatgccattgaggatcatgggatagacgcatatccattcactcctgaaaagttttctgaactcgatgaaatagcaaaggccaagg |
27210966 |
T |
|
| Q |
405 |
aggcatctcaaacacttgagtccgttttggtgtctggcgatcgagattttatcattgacaaagatgcgaagaaggtaatatatctta |
491 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||| |||||||||||||| ||||| |
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| T |
27210967 |
aggcatctcaaacacttgagtcggttttggtgtctggcgatcaagattttgtcattgagaaagatgggaagaaggtaatatttctta |
27211053 |
T |
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