View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18018_low_9 (Length: 445)
Name: NF18018_low_9
Description: NF18018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18018_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 57 - 427
Target Start/End: Complemental strand, 19951135 - 19950760
Alignment:
| Q |
57 |
ggtccatggctttaagtagtgccatgtggtgcactatgaaccctagctccaccaccaaatgtaattctcttctttaattgttatggattgttgagtttac |
156 |
Q |
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| T |
19951135 |
ggtccatggctttaagtagtgccatgtggtgcactatgaaccctagctccaccaccaaatgtaattctcttctttaattgttatggattgttgagtttac |
19951036 |
T |
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| Q |
157 |
acacaaattaacgtgaaattcacatggtcggtttgttaatttgtagttgaaggaaatgtgtatgtgtggtgtcaaatagttggtaatcaattgcatgtcc |
256 |
Q |
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| T |
19951035 |
acacaaattaacgtgaaattcacatggtcggtttgttaatttgtagttgaaggaaatgtgtatgtgtggtgtcaaatagttggtaatcaattgcatgtcc |
19950936 |
T |
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| Q |
257 |
c--tatgaccata-caaaaaacaatgatttgcttttcaaaatatatatcattttaattaagaaaaacaatgattttccttcaa--nnnnnnnnaggaaaa |
351 |
Q |
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| T |
19950935 |
ctatatgaccataccaaaaaacaatgatttgcttttcaaaatatatatcattttaattaagaaaaacaatgattttccttcaattttttttttaggaaaa |
19950836 |
T |
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| Q |
352 |
caatgatttgaagcataaaccgaaatgacgaacatcaagatcaaagttaataattcatcgatttgggaacgaaatc |
427 |
Q |
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| T |
19950835 |
caatgatttgaatcataaaccgaaatgacgaacatcaagatcaaagttaataattcatcgatttgggaacgcaatc |
19950760 |
T |
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