View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18019_high_4 (Length: 457)
Name: NF18019_high_4
Description: NF18019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18019_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 3950973 - 3950624
Alignment:
| Q |
1 |
aaaatatcacaagaaattaaattaatggtcatagcaataagaaagcaatttctgaccttcaatgctttggctgctagagatctgattcaactttctccca |
100 |
Q |
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| T |
3950973 |
aaaatatcacaaaaaattaaattaacggtcatagcaataagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctccca |
3950874 |
T |
|
| Q |
101 |
tattgaagaagcaatgtcattgacctttctctccaactcatacacattcaccctccagcaaagcattggatttgtatattagacaaatattaatttcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3950873 |
tattgaagaagcaatgtcattgacctttctctccaactcatacacattcaccctccagcaaagcattggatttgtatattagacaaatattaatctcatc |
3950774 |
T |
|
| Q |
201 |
attattcaggtataaaatagcaggggcaaaagttgacttgccaaacagtacacatgctggaaatatctgtatgaatcgtgtatcatcaacaaaaacaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950773 |
attattcaggtataaaatagcaggggcaaaagttgacttgccaaacagtacacatgctggaaatatctgtatgaatcgtgtatcatcaacaaaaacaaaa |
3950674 |
T |
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| Q |
301 |
tttgtatgaacatgtgacatgcactttcctttaagttttttgataaaatt |
350 |
Q |
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| T |
3950673 |
tttgtatgaacatgtgacatgcactttcctttaagttttttgataaaatt |
3950624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 344 - 443
Target Start/End: Complemental strand, 3950422 - 3950323
Alignment:
| Q |
344 |
taaaattaattataacttgactcaaaacgtcatttttgtactaaacataaatcacttcatacaactcacttacaagtaaacccaattttacagaataaat |
443 |
Q |
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| T |
3950422 |
taaaattaattataacttgactcaaaacgtcatttttgtactaaacataaatcacttcatacaactcacttacaagtaaacccaattttacagaataaat |
3950323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 4215919 - 4216023
Alignment:
| Q |
23 |
taatggtcatagcaataagaaagcaatttctgaccttcaatgctttggctgctagagatctgattcaactttctcccatattgaagaagcaatgtcattg |
122 |
Q |
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||||||| ||||| |||||||||| || | || ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
4215919 |
taatggtgatagccataagaaagctataacggaacttcaatgctttggccgctagagatctgattcaactttctatcatatggaagaagcaatgtcattg |
4216018 |
T |
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| Q |
123 |
acctt |
127 |
Q |
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||||| |
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| T |
4216019 |
acctt |
4216023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 3796807 - 3796899
Alignment:
| Q |
35 |
caataagaaagcaatttctgaccttcaatgctttggctgctagagatctgattcaactttctcccatattgaagaagcaatgtcattgacctt |
127 |
Q |
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| T |
3796807 |
caataagaaagctataacggaacttcaatgctttggccgctagtgatctgattcaactttctatcatatggaagaagcaatgtcattgacctt |
3796899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 4014324 - 4014408
Alignment:
| Q |
43 |
aagcaatttctgaccttcaatgctttggctgctagagatctgattcaactttctcccatattgaagaagcaatgtcattgacctt |
127 |
Q |
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| T |
4014324 |
aagcaatttcaaaccttcaatgctttagctgctatagatctgattcaagtttctctcatatgaaagaagtaatgtcattgacctt |
4014408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 4027923 - 4027999
Alignment:
| Q |
19 |
aaattaatggtcatagcaataagaaagcaatttctgaccttcaatgctttggctgctagagatctgattcaactttc |
95 |
Q |
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| T |
4027923 |
aaattaatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttc |
4027999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 3961159 - 3961099
Alignment:
| Q |
43 |
aagcaatttctgaccttcaatgctttggctgctagagatctgattcaactttctcccatat |
103 |
Q |
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| T |
3961159 |
aagcaattactaaccttcaatgatttggctgctagagatctgtttcaactttctctcatat |
3961099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 275
Target Start/End: Original strand, 4028044 - 4028182
Alignment:
| Q |
140 |
atacacattcaccctccagcaaagcattggatttgtatattag---acaaatattaatttcatcattattcaggtataaaatagcaggggcaaaagttga |
236 |
Q |
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|||||||||||| |||| || |||||| ||| ||||||||| | |||||||||| ||| ||||||| | |||||||||||||||||||| ||||| |
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| T |
4028044 |
atacacattcacactcccacagagcattagatctgtatattattaaaaaaatattaatgtcaccattatttaaatataaaatagcaggggcaaacgttga |
4028143 |
T |
|
| Q |
237 |
cttgccaaacagtacacatgctggaaatatctgtatgaa |
275 |
Q |
| |
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|||| |||| | ||||||||||| |||||||||||| |
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| T |
4028144 |
gttgcttaacaatttacatgctggaattatctgtatgaa |
4028182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 4221238 - 4221287
Alignment:
| Q |
43 |
aagcaatttctgaccttcaatgctttggctgctagagatctgattcaact |
92 |
Q |
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|||||||| |||||||| ||||||||| ||||||||||||||||||||| |
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| T |
4221238 |
aagcaattactgaccttaaatgctttgtttgctagagatctgattcaact |
4221287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 3822703 - 3822754
Alignment:
| Q |
41 |
gaaagcaatttctgaccttcaatgctttggctgctagagatctgattcaact |
92 |
Q |
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||||| |||| |||||||| ||||||||| ||||||||||||||||||||| |
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| T |
3822703 |
gaaagaaattactgaccttaaatgctttgtttgctagagatctgattcaact |
3822754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 3796915 - 3796952
Alignment:
| Q |
135 |
aactcatacacattcaccctccagcaaagcattggatt |
172 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||| |
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| T |
3796915 |
aactcatacacattcaccttcctgcaaagcattggatt |
3796952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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