View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18019_high_7 (Length: 318)

Name: NF18019_high_7
Description: NF18019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18019_high_7
NF18019_high_7
[»] scaffold0024 (3 HSPs)
scaffold0024 (11-318)||(21363-21671)
scaffold0024 (12-168)||(49770-49927)
scaffold0024 (254-318)||(58858-58922)
[»] chr8 (22 HSPs)
chr8 (260-318)||(41475145-41475203)
chr8 (261-316)||(26215424-26215479)
chr8 (262-318)||(3537116-3537172)
chr8 (254-314)||(16210975-16211035)
chr8 (254-318)||(37444500-37444564)
chr8 (272-318)||(2364558-2364604)
chr8 (272-318)||(4558737-4558783)
chr8 (272-318)||(7646145-7646191)
chr8 (264-318)||(42597332-42597386)
chr8 (266-314)||(1929984-1930032)
chr8 (261-309)||(10114418-10114466)
chr8 (262-318)||(14280486-14280542)
chr8 (255-318)||(3936771-3936834)
chr8 (263-318)||(21653011-21653066)
chr8 (255-302)||(27492881-27492928)
chr8 (255-309)||(40859812-40859866)
chr8 (278-315)||(12497319-12497356)
chr8 (275-312)||(31315544-31315581)
chr8 (274-318)||(1470941-1470985)
chr8 (254-306)||(8216801-8216853)
chr8 (278-318)||(12976158-12976198)
chr8 (278-318)||(35534696-35534735)
[»] chr4 (41 HSPs)
chr4 (255-318)||(3155525-3155588)
chr4 (263-318)||(6364079-6364134)
chr4 (261-318)||(51630039-51630096)
chr4 (271-318)||(437517-437565)
chr4 (260-316)||(2733247-2733303)
chr4 (272-312)||(21193937-21193977)
chr4 (263-318)||(7601689-7601744)
chr4 (255-318)||(50662817-50662880)
chr4 (260-318)||(26520314-26520372)
chr4 (271-312)||(8422928-8422969)
chr4 (269-318)||(25885795-25885844)
chr4 (272-312)||(20907112-20907152)
chr4 (278-318)||(25904295-25904335)
chr4 (278-318)||(43505901-43505941)
chr4 (260-315)||(2987116-2987171)
chr4 (271-318)||(44138497-44138544)
chr4 (255-318)||(44249208-44249271)
chr4 (261-308)||(49004065-49004112)
chr4 (260-318)||(1706549-1706607)
chr4 (278-316)||(2702985-2703023)
chr4 (255-305)||(21731751-21731801)
chr4 (276-318)||(30770826-30770868)
chr4 (280-318)||(50681174-50681212)
chr4 (272-318)||(52326194-52326240)
chr4 (255-312)||(1203208-1203265)
chr4 (271-312)||(4798650-4798691)
chr4 (277-318)||(7022612-7022653)
chr4 (284-317)||(13216290-13216323)
chr4 (253-318)||(17883988-17884053)
chr4 (273-318)||(49803151-49803196)
chr4 (271-312)||(51555958-51555999)
chr4 (278-315)||(55414508-55414545)
chr4 (264-312)||(6987832-6987880)
chr4 (278-318)||(9760385-9760425)
chr4 (272-312)||(19040206-19040246)
chr4 (272-312)||(27249710-27249750)
chr4 (278-318)||(31851399-31851439)
chr4 (263-318)||(40174495-40174548)
chr4 (278-318)||(41336706-41336745)
chr4 (278-318)||(44797831-44797871)
chr4 (272-312)||(51044550-51044590)
[»] chr2 (36 HSPs)
chr2 (255-318)||(4026739-4026802)
chr2 (255-318)||(42420379-42420442)
chr2 (260-318)||(42457875-42457933)
chr2 (257-305)||(19608723-19608771)
chr2 (254-318)||(26143726-26143789)
chr2 (255-318)||(39567825-39567888)
chr2 (261-318)||(23747232-23747289)
chr2 (264-312)||(43530202-43530250)
chr2 (271-315)||(44119722-44119766)
chr2 (260-318)||(3611153-3611211)
chr2 (271-312)||(3102631-3102672)
chr2 (271-316)||(18962125-18962170)
chr2 (271-312)||(25609734-25609775)
chr2 (278-318)||(2195906-2195946)
chr2 (272-312)||(5045248-5045288)
chr2 (272-316)||(5998789-5998833)
chr2 (278-318)||(41241217-41241257)
chr2 (278-318)||(42868546-42868586)
chr2 (275-318)||(7825194-7825237)
chr2 (255-318)||(9395052-9395115)
chr2 (255-318)||(10619300-10619363)
chr2 (254-293)||(32364834-32364873)
chr2 (260-318)||(36114346-36114404)
chr2 (260-318)||(42907286-42907344)
chr2 (262-317)||(44600468-44600525)
chr2 (260-318)||(44786490-44786548)
chr2 (271-316)||(5133710-5133755)
chr2 (262-307)||(7928390-7928435)
chr2 (267-312)||(9551513-9551558)
chr2 (275-312)||(28677743-28677780)
chr2 (272-312)||(7282957-7282997)
chr2 (278-318)||(12464558-12464598)
chr2 (278-318)||(13325515-13325555)
chr2 (278-318)||(15305602-15305642)
chr2 (278-318)||(32592532-32592572)
chr2 (272-316)||(43141497-43141541)
[»] chr6 (29 HSPs)
chr6 (254-318)||(9093641-9093705)
chr6 (261-318)||(24476530-24476587)
chr6 (254-318)||(4163096-4163160)
chr6 (254-318)||(4224717-4224781)
chr6 (263-318)||(9559626-9559681)
chr6 (271-318)||(29274314-29274361)
chr6 (255-318)||(33117464-33117527)
chr6 (255-317)||(264293-264355)
chr6 (277-318)||(11363453-11363494)
chr6 (270-318)||(430461-430509)
chr6 (278-318)||(8147647-8147687)
chr6 (254-318)||(33736759-33736823)
chr6 (271-318)||(3217275-3217322)
chr6 (271-314)||(10616796-10616839)
chr6 (255-318)||(32206105-32206168)
chr6 (267-312)||(2027895-2027940)
chr6 (271-312)||(2514640-2514681)
chr6 (273-310)||(20370839-20370876)
chr6 (260-313)||(23063618-23063671)
chr6 (271-308)||(33416323-33416360)
chr6 (263-315)||(103383-103435)
chr6 (264-312)||(781316-781364)
chr6 (264-312)||(2206521-2206569)
chr6 (264-312)||(3171522-3171570)
chr6 (274-318)||(10645411-10645455)
chr6 (278-318)||(24626240-24626280)
chr6 (278-318)||(30536643-30536683)
chr6 (272-316)||(33911368-33911412)
chr6 (278-310)||(35070723-35070755)
[»] chr5 (35 HSPs)
chr5 (254-313)||(28776896-28776955)
chr5 (260-318)||(465881-465939)
chr5 (264-318)||(706394-706448)
chr5 (260-314)||(4014513-4014567)
chr5 (260-318)||(7674575-7674633)
chr5 (260-318)||(12425498-12425556)
chr5 (274-318)||(14932231-14932275)
chr5 (263-314)||(40590457-40590508)
chr5 (263-317)||(1465105-1465159)
chr5 (248-318)||(3566403-3566473)
chr5 (264-318)||(4855629-4855683)
chr5 (255-293)||(6096465-6096503)
chr5 (260-318)||(9202833-9202891)
chr5 (261-315)||(34112803-34112857)
chr5 (248-318)||(34736612-34736681)
chr5 (255-312)||(42569071-42569128)
chr5 (278-318)||(9107057-9107097)
chr5 (278-318)||(12554408-12554448)
chr5 (278-318)||(35446000-35446040)
chr5 (266-318)||(37112343-37112395)
chr5 (278-318)||(42500310-42500350)
chr5 (255-318)||(11835199-11835262)
chr5 (255-318)||(19460471-19460534)
chr5 (255-318)||(39105386-39105449)
chr5 (271-318)||(40864660-40864707)
chr5 (260-318)||(5963367-5963425)
chr5 (271-312)||(7096218-7096259)
chr5 (271-312)||(11054124-11054165)
chr5 (277-318)||(11615452-11615493)
chr5 (270-315)||(24029999-24030044)
chr5 (278-318)||(3932770-3932810)
chr5 (262-318)||(6593229-6593285)
chr5 (272-312)||(12407752-12407792)
chr5 (278-318)||(29925786-29925826)
chr5 (254-310)||(42099954-42100009)
[»] chr3 (30 HSPs)
chr3 (264-318)||(44061108-44061162)
chr3 (260-315)||(30574002-30574055)
chr3 (255-315)||(34235164-34235224)
chr3 (260-316)||(46030915-46030971)
chr3 (272-318)||(2128336-2128382)
chr3 (254-318)||(34638049-34638114)
chr3 (254-315)||(49465751-49465812)
chr3 (262-314)||(23808140-23808192)
chr3 (255-318)||(23815975-23816036)
chr3 (278-318)||(30956711-30956751)
chr3 (278-318)||(30972523-30972563)
chr3 (255-318)||(25447329-25447392)
chr3 (254-293)||(37389122-37389161)
chr3 (271-318)||(39602294-39602341)
chr3 (272-310)||(8142803-8142841)
chr3 (272-318)||(30669055-30669101)
chr3 (255-304)||(402640-402689)
chr3 (273-318)||(1395611-1395656)
chr3 (271-312)||(20192697-20192738)
chr3 (260-293)||(20669106-20669139)
chr3 (255-316)||(31403280-31403341)
chr3 (277-318)||(46778312-46778353)
chr3 (264-312)||(905061-905109)
chr3 (278-318)||(15304432-15304472)
chr3 (278-310)||(24684916-24684948)
chr3 (255-307)||(32582257-32582309)
chr3 (278-318)||(35959541-35959581)
chr3 (278-318)||(37689469-37689509)
chr3 (274-318)||(42809242-42809286)
chr3 (274-318)||(48397587-48397631)
[»] chr1 (45 HSPs)
chr1 (260-318)||(46252767-46252825)
chr1 (264-312)||(17420134-17420182)
chr1 (248-308)||(45975605-45975665)
chr1 (278-318)||(47432041-47432081)
chr1 (271-318)||(3887717-3887764)
chr1 (255-314)||(8852782-8852841)
chr1 (264-318)||(1432446-1432500)
chr1 (264-314)||(4700155-4700205)
chr1 (260-318)||(9572193-9572251)
chr1 (260-318)||(23544725-23544783)
chr1 (260-318)||(30581729-30581787)
chr1 (264-318)||(36070181-36070235)
chr1 (272-318)||(45145165-45145211)
chr1 (260-318)||(51190788-51190846)
chr1 (261-310)||(836432-836481)
chr1 (248-318)||(9656561-9656635)
chr1 (271-315)||(7028230-7028274)
chr1 (278-318)||(30043856-30043896)
chr1 (254-318)||(37841919-37841983)
chr1 (262-318)||(41163089-41163145)
chr1 (271-318)||(289178-289225)
chr1 (271-318)||(4549804-4549851)
chr1 (277-316)||(29904703-29904742)
chr1 (273-316)||(37842442-37842485)
chr1 (271-318)||(46499939-46499986)
chr1 (264-318)||(2294842-2294896)
chr1 (264-318)||(4445639-4445693)
chr1 (261-318)||(15784263-15784321)
chr1 (255-305)||(15942255-15942305)
chr1 (260-318)||(27146333-27146391)
chr1 (270-312)||(50319229-50319271)
chr1 (278-315)||(17830099-17830136)
chr1 (265-318)||(26184683-26184736)
chr1 (278-315)||(30582036-30582073)
chr1 (271-315)||(172665-172709)
chr1 (255-315)||(5894251-5894311)
chr1 (262-306)||(7069229-7069273)
chr1 (262-314)||(7137090-7137142)
chr1 (279-315)||(30191937-30191973)
chr1 (272-316)||(33339507-33339551)
chr1 (266-318)||(34952148-34952200)
chr1 (264-312)||(35017505-35017553)
chr1 (275-311)||(36643109-36643145)
chr1 (266-318)||(43722400-43722452)
chr1 (274-318)||(45990143-45990187)
[»] chr7 (19 HSPs)
chr7 (254-318)||(40009391-40009455)
chr7 (272-318)||(28613619-28613665)
chr7 (264-310)||(36874058-36874104)
chr7 (261-302)||(19214492-19214533)
chr7 (264-317)||(42656446-42656499)
chr7 (254-315)||(43250767-43250828)
chr7 (278-318)||(119855-119895)
chr7 (254-318)||(20881721-20881785)
chr7 (278-318)||(45004711-45004751)
chr7 (278-318)||(45806411-45806451)
chr7 (254-293)||(33552931-33552970)
chr7 (275-318)||(43152987-43153030)
chr7 (268-318)||(3968280-3968330)
chr7 (271-312)||(5276162-5276203)
chr7 (271-312)||(31341132-31341173)
chr7 (272-312)||(30133988-30134028)
chr7 (261-309)||(33673006-33673054)
chr7 (282-318)||(40689071-40689107)
chr7 (278-318)||(46078092-46078132)
[»] scaffold0590 (1 HSPs)
scaffold0590 (271-312)||(1165-1206)
[»] scaffold0275 (1 HSPs)
scaffold0275 (271-312)||(2769-2810)
[»] scaffold0103 (1 HSPs)
scaffold0103 (273-318)||(51508-51553)
[»] scaffold0018 (1 HSPs)
scaffold0018 (278-318)||(158052-158092)


Alignment Details
Target: scaffold0024 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 21671 - 21363
Alignment:
Q  11 ataatactaaactctaacccaaaacccattttttcttcataaaaaagtttcaatttttacgaacaaaaatgcgtttatttcaaatggtattttttatata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  21671 ataatactaaactctaacccaaaacccattttttcttcataaaaaagtttcaattttgacgaacaaaaatgcgtttatttcaaatggtattttttatatt 21572  T
Q  111 cattaatccataaatgggtttcaaattatgatcaaatgatttcatagtgaaattgatgtggtgggttatcatcattttcattcaattgggttttagtccc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21571 cattaatccataaatgggtttcaaattatgatcaaatgatttcatagtgaaattgatgtggtgggttatcatcattttcattcaattgggttttagtccc 21472  T
Q  211 cgtttggacaaac-nnnnnnngtagcttatagctgctaacaaagacttaccatgataagcacttatgtataagctatttttataggaaaagataaaataa 309  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21471 cgtttggacaaacttttttttgtagcttatagctgctaacaaagacttaccatgataagcacttatgtataagctatttttataggaaaagataaaataa 21372  T
Q  310 agttaaatt 318  Q
    |||||||||    
T  21371 agttaaatt 21363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 49770 - 49927
Alignment:
Q  12 taatactaaactctaacccaaaacccattttttcttcataaaaaagtttcaatttttacgaacaaaaatgcgtttatttcaaatgg-tattttttatata 110  Q
    ||||||||||| |||| ||| |||||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||||||| | |||||||||||    
T  49770 taatactaaaccctaaaccataacccattttttcttcatcaaaaaggttcaatttttatgaacaaaaatgtgtttatttcaaatggatgttttttatata 49869  T
Q  111 cattaatccataaatgggtttcaaattatgatcaaatgatttcatagtgaaattgatg 168  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  49870 cattaatccacaaatgggtttgaaattatgatcaaatgatttcatagtgaaattgatg 49927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 58858 - 58922
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  58858 acttatcatgatcagcacttatgtgtaagctatttttataggaaaagttaaaataaagttaaatt 58922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 41475203 - 41475145
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  41475203 catgataagcacttatgtataagctaattttatagcaaaagataaaatacagttaaatt 41475145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 26215424 - 26215479
Alignment:
Q  261 atgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaa 316  Q
    ||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||    
T  26215424 atgataagcgcttatgtataagctatttctataacaaaagataaaataaagttaaa 26215479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 3537172 - 3537116
Alignment:
Q  262 tgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||||||||| |||||    
T  3537172 tgataagcacttttgtataagcaatttctatagcaaaagataaaataaagtcaaatt 3537116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 16211035 - 16210975
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagtta 314  Q
    ||||| ||||||| ||||| ||||||||||||||| ||||| ||| |||||||||||||||    
T  16211035 acttatcatgatacgcactcatgtataagctatttctatagtaaatgataaaataaagtta 16210975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 37444564 - 37444500
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| |||||||||| |||||||||||||||||  ||||  |||||||||| ||||||||||||    
T  37444564 acttatcatgataagcgcttatgtataagctattactataacaaaagataaagtaaagttaaatt 37444500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 2364604 - 2364558
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  2364604 ttatgtatacgctatttttatagcaaaagataaaataaagtcaaatt 2364558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 4558737 - 4558783
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||||    
T  4558737 ttatgtataagctatttctataataaaagataaaataaagttaaatt 4558783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 7646145 - 7646191
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||||    
T  7646145 ttatgtataagctatttctataagaaaaggtaaaataaagttaaatt 7646191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 42597332 - 42597386
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| ||||||||||||||||||| ||||  ||||||||||||||||| |||||    
T  42597332 ataagtacttatgtataagctatttctataacaaaagataaaataaagtaaaatt 42597386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 1929984 - 1930032
Alignment:
Q  266 aagcacttatgtataagctatttttataggaaaagataaaataaagtta 314  Q
    |||| |||||||||||| ||||| ||||| |||||||||||||||||||    
T  1929984 aagcgcttatgtataagttatttctatagaaaaagataaaataaagtta 1930032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 10114418 - 10114466
Alignment:
Q  261 atgataagcacttatgtataagctatttttataggaaaagataaaataa 309  Q
    ||||||||  |||||||||||||||||| ||||| ||||||||||||||    
T  10114418 atgataagtgcttatgtataagctatttctatagcaaaagataaaataa 10114466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 14280542 - 14280486
Alignment:
Q  262 tgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||| ||||||||||| |||||| ||||| |||||||||||| || |||||||    
T  14280542 tgataagcgcttatgtataacctatttctatagcaaaagataaaattaaattaaatt 14280486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 3936771 - 3936834
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| ||||||| |||||||||||||| |||||| ||||  ||| |||||||||||| ||||||    
T  3936771 cttatcatgataggcacttatgtataatctatttctataacaaaggataaaataaagctaaatt 3936834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 21653011 - 21653066
Alignment:
Q  263 gataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||| |||||||||| ||||||| | ||  |||||||||||||||||||||||    
T  21653011 gataagcgcttatgtataggctatttatgtaacaaaagataaaataaagttaaatt 21653066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 27492881 - 27492928
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagat 302  Q
    |||| ||||||||||||||||||||||| ||||| ||||| |||||||    
T  27492881 cttatcatgataagcacttatgtataaggtatttctatagcaaaagat 27492928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 40859866 - 40859812
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataa 309  Q
    |||| |||||||||| |||||||||||||||||||| |||   ||||||||||||    
T  40859866 cttatcatgataagcgcttatgtataagctatttttgtagcgtaagataaaataa 40859812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 12497356 - 12497319
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaa 315  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  12497356 ataagccatttttatagcaaaagataaaataaagttaa 12497319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 31315581 - 31315544
Alignment:
Q  275 tgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||||  |||||||||||||||||    
T  31315581 tgtataagctatttttataataaaagataaaataaagt 31315544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 1470985 - 1470941
Alignment:
Q  274 atgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||| ||||  ||||||||||||||||| |||||    
T  1470985 atgtataagctatttctataataaaagataaaataaagtcaaatt 1470941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 8216801 - 8216853
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaa 306  Q
    ||||| |||||||| ||||||||||||||| |||| ||||  |||||||||||    
T  8216801 acttatcatgataaacacttatgtataagccatttatataacaaaagataaaa 8216853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 12976158 - 12976198
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| ||||| |||| ||||||||||||||||||    
T  12976158 ataagctatttctatagcaaaatataaaataaagttaaatt 12976198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 35534735 - 35534696
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  35534735 ataagatatttttatag-aaaagataaaataaagttaaatt 35534696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 3155525 - 3155588
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||||  |||||||||||||||| ||||| |||||||||||||||||||||||    
T  3155525 cttatcatgataagcatgtatgtataagctatttctatagcaaaagataaaataaagttaaatt 3155588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 6364079 - 6364134
Alignment:
Q  263 gataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||| |||||    
T  6364079 gataagcacttatgtataagctatttctataacaaaagataaaataaagtgaaatt 6364134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 51630039 - 51630096
Alignment:
Q  261 atgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||| |||  ||||||||| ||||| |||||||||||||||||||||||    
T  51630039 atgataagcacttgtgttcaagctatttatatagcaaaagataaaataaagttaaatt 51630096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 437565 - 437517
Alignment:
Q  271 cttatgtataagctattttt-ataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  437565 cttatgtataagctattttttatagcaaaagataaaataaagttaaatt 437517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 2733247 - 2733303
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaa 316  Q
    ||||||| |||||||||||||||| ||||||||   |||||||||||||||||||||    
T  2733247 catgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 2733303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 21193937 - 21193977
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  21193937 ttatgtataagctatttttatagtaaaagataaaataaagt 21193977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 7601689 - 7601744
Alignment:
Q  263 gataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||| |||||||||||||||||  ||||| ||| |||||||||||||||||||    
T  7601689 gataagcgcttatgtataagctattcctatagcaaaggataaaataaagttaaatt 7601744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 50662880 - 50662817
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||| |||  ||||||||||||||||||||||| | |||||||||||| ||||||||    
T  50662880 cttatcatgatgagcgtttatgtataagctatttttatagcataagataaaataatgttaaatt 50662817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 26520372 - 26520314
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||||||||| || ||| ||||  ||||||| |||||||||||||||    
T  26520372 catgataagcacttatgtataaactgtttctataacaaaagatgaaataaagttaaatt 26520314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 8422969 - 8422928
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  8422969 cttatgtataagctatttttataaaaaaagataaaataaagt 8422928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 25885795 - 25885844
Alignment:
Q  269 cacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| |||| ||| ||||| |||||||||||||||||||||||    
T  25885795 cacttatgtattagctctttctatagcaaaagataaaataaagttaaatt 25885844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 20907112 - 20907152
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  20907112 ttatgtataagctatttgtataagaaaagataaaataaagt 20907152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 25904335 - 25904295
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  25904335 ataagctatttttacagcaaaagataaaataaagttaaatt 25904295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 43505901 - 43505941
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  43505901 ataagctatttttatagcaaaagataaaataacgttaaatt 43505941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 2987116 - 2987171
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaa 315  Q
    |||||||||||||||| |||||||||||| || |  |||| |||||||||||||||    
T  2987116 catgataagcacttatttataagctatttctacaacaaaaaataaaataaagttaa 2987171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 44138497 - 44138544
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||| ||| ||||| | |||||||||||||||||||||    
T  44138497 cttatgtataagctgtttctatagcagaagataaaataaagttaaatt 44138544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 44249208 - 44249271
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| ||||||||||| ||||||||||| |||||  |||  ||||||||||| |||||||||||    
T  44249208 cttatcatgataagcaattatgtataagttatttcaataacaaaagataaaacaaagttaaatt 44249271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 49004112 - 49004065
Alignment:
Q  261 atgataagcacttatgtataagctatttttataggaaaagataaaata 308  Q
    ||||||||| ||||||||||||| |||| ||||| |||||||||||||    
T  49004112 atgataagcgcttatgtataagcaatttctatagcaaaagataaaata 49004065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 1706549 - 1706607
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||  |||||||| ||||||||||||||| ||||| |||||||| ||| ||||    
T  1706549 catgataagtgcttatgtagaagctatttttatagaaaaagttaaaataatgttcaatt 1706607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 316
Target Start/End: Original strand, 2702985 - 2703023
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaa 316  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  2702985 ataagctatttatatagcaaaagataaaataaagttaaa 2703023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 21731801 - 21731751
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaa 305  Q
    |||| |||||||||  |||| ||||||||||||||||||| ||||||||||    
T  21731801 cttatcatgataagtgcttacgtataagctatttttatagcaaaagataaa 21731751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 30770826 - 30770868
Alignment:
Q  276 gtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||| |||||||||||  |||||||||||||||||||||||    
T  30770826 gtataaactatttttataataaaagataaaataaagttaaatt 30770868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 50681212 - 50681174
Alignment:
Q  280 aagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  50681212 aagctatttttataggataagataaaataatgttaaatt 50681174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 52326240 - 52326194
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||||| ||   |||||||||||||||||||||||    
T  52326240 ttatgtataagctattttaatgataaaagataaaataaagttaaatt 52326194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 1203265 - 1203208
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||| ||||| ||||| || |||||||||||||| ||||| |||| ||||||||||||    
T  1203265 cttatcatgaaaagcatttttgtataagctatttctatagcaaaacataaaataaagt 1203208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 4798691 - 4798650
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  4798691 cttatgtataagctatttctatatcaaaagataaaataaagt 4798650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 7022612 - 7022653
Alignment:
Q  277 tataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| |||||||||||||| ||| |||||    
T  7022612 tataagctatttttataagaaaagataaaatagagtcaaatt 7022653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 13216323 - 13216290
Alignment:
Q  284 tatttttataggaaaagataaaataaagttaaat 317  Q
    ||||||||||| ||||||||||||||||||||||    
T  13216323 tatttttatagcaaaagataaaataaagttaaat 13216290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 17883988 - 17884053
Alignment:
Q  253 gacttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||| |||| ||||  || |||| |||||||||| ||||  |||||||||||||||||||||||    
T  17883988 gacttatcatggtaagtgctcatgtgtaagctatttctataacaaaagataaaataaagttaaatt 17884053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 49803151 - 49803196
Alignment:
Q  273 tatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||| ||||| ||||| |||||||||||| ||||||||||    
T  49803151 tatgtataagttatttctatagcaaaagataaaatgaagttaaatt 49803196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 51555999 - 51555958
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||||||||||||||| |||||  |||||||||||||||||    
T  51555999 cttatgtataagctattattataacaaaagataaaataaagt 51555958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 55414545 - 55414508
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaa 315  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  55414545 ataagctatttctattggaaaagataaaataaagttaa 55414508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 6987880 - 6987832
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||| |||||||||||| ||||| |||||| ||||||||||| |||||    
T  6987880 ataagtacttatgtataaactattattatagtaaaagataaaacaaagt 6987832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 9760385 - 9760425
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| ||||||||| | |||||||||||||||||||||||    
T  9760385 ataagttatttttattgaaaaagataaaataaagttaaatt 9760425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 19040246 - 19040206
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||||||||||||||| | ||| |||||||||||||||||    
T  19040246 ttatgtataagctatttctttagaaaaagataaaataaagt 19040206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 27249710 - 27249750
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||| |||||||||||||||||| |||| ||||||||||||    
T  27249710 ttatatataagctatttttatagtaaaatataaaataaagt 27249750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 31851399 - 31851439
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||  ||| |||||||||||||||||||    
T  31851399 ataagctatttttataacaaatgataaaataaagttaaatt 31851439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 40174495 - 40174548
Alignment:
Q  263 gataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| ||||||||||||||||||  ||||||| |||| ||||| ||||||||||||    
T  40174495 gatatgcacttatgtataagcta--tttatagcaaaaaataaattaaagttaaatt 40174548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 41336706 - 41336745
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  41336706 ataagctatttttatagcaaa-gataaaataaagttaaatt 41336745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 44797831 - 44797871
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| ||||||||||| || ||||||||    
T  44797831 ataagctatttttatagcaaaagataaaacaacgttaaatt 44797871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 51044590 - 51044550
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||||||||||||||| ||||  |||||||||||||||||    
T  51044590 ttatgtataagctatttctataacaaaagataaaataaagt 51044550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 4026739 - 4026802
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||  ||||| |||||||||||||||||| |||||||||||||||||||||||    
T  4026739 cttatcatgataagtgcttatctataagctatttttatagcaaaagataaaataaagttaaatt 4026802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 42420442 - 42420379
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||| |||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  42420442 cttatcatgataagcgcttacgtataagctatttttatagcaaaagataaaataacgttaaatt 42420379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 42457875 - 42457933
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||||||    
T  42457875 catgataagcatttatgtataatctatttctatagtaaaagataaaataaagttaaatt 42457933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 19608771 - 19608723
Alignment:
Q  257 taccatgataagcacttatgtataagctatttttataggaaaagataaa 305  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  19608771 taccatgataagcacttatgtataagctatttttacagcaaaagataaa 19608723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 26143789 - 26143726
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||||||| ||||    
T  26143789 acttaccatgata-gcacttgtgtataagctatttctatagcaaaagataaaataaagttcaatt 26143726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 39567825 - 39567888
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||||||| |||||||| ||||| ||||  |||||||||||||||||||||||    
T  39567825 cttatcatgataagcacttgtgtataagatatttctataacaaaagataaaataaagttaaatt 39567888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 23747232 - 23747289
Alignment:
Q  261 atgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||| || |||||||    
T  23747232 atgataaacacttatgtataagctatttttatatcaaaagataaaatgaatttaaatt 23747289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 43530250 - 43530202
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  43530250 ataagcacttatgaataagctatttctataggacaagataaaataaagt 43530202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 44119722 - 44119766
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaa 315  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||    
T  44119722 cttatgtataagttatttttatagtaaaagataaaataaagttaa 44119766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 3611153 - 3611211
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||  |||||||||||| ||||| ||||| ||||| |||||||||||||||||    
T  3611153 catgataagtgcttatgtataagttatttctatagcaaaaggtaaaataaagttaaatt 3611211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 3102631 - 3102672
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  3102631 cttatgtataagctatttttatagcaaaatataaaataaagt 3102672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 18962170 - 18962125
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaaa 316  Q
    ||||||||| |||||||||||||  |||||||||||||||||||||    
T  18962170 cttatgtattagctatttttataacaaaagataaaataaagttaaa 18962125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 25609734 - 25609775
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  25609734 cttatgtataagctatttctataagaaaagataaaataaagt 25609775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 2195906 - 2195946
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  2195906 ataagctatttttatagaaaaagataaaatgaagttaaatt 2195946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 5045288 - 5045248
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  5045288 ttatgtataagctatttttataacaaaagataaaataaagt 5045248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 5998833 - 5998789
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagttaaa 316  Q
    |||| |||||||||||||||||  |||||||||||||||||||||    
T  5998833 ttatatataagctatttttataacaaaagataaaataaagttaaa 5998789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 41241257 - 41241217
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  41241257 ataagctatttctataggaaaagataaaatgaagttaaatt 41241217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 42868586 - 42868546
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  42868586 ataagctattttcatagaaaaagataaaataaagttaaatt 42868546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 7825194 - 7825237
Alignment:
Q  275 tgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||||||  |||||||||| ||||||||||||    
T  7825194 tgtataagctatttttataacaaaagataaagtaaagttaaatt 7825237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 9395052 - 9395115
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||| |||| ||||||||| | ||| ||||| |||||||||||||||| ||||||    
T  9395052 cttatcatgataaacactcatgtataagatttttctatagaaaaagataaaataaagctaaatt 9395115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 10619363 - 10619300
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||| || ||  || |||||||||||||| ||||||||||| |||||||||||    
T  10619363 cttatcatgataagcgctcatacattagctatttttatagaaaaagataaaacaaagttaaatt 10619300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 32364873 - 32364834
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttata 293  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  32364873 acttatcatgataagcacttatgtataagctatttctata 32364834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 36114346 - 36114404
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||  ||||| ||| ||||||||||||   |||||||||||||||||||||||    
T  36114346 catgataagtgcttatatattagctatttttatgacaaaagataaaataaagttaaatt 36114404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 42907286 - 42907344
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||  |||||||||||| ||||  | |||| ||||||||||||||||    
T  42907286 catgataagcacttacatataagctatttctataacagaagaaaaaataaagttaaatt 42907344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 44600468 - 44600525
Alignment:
Q  262 tgataagcacttatgtataagctatttttatagg--aaaagataaaataaagttaaat 317  Q
    |||||||  |||||||||||||||||| |||||   ||||||||||||||||||||||    
T  44600468 tgataagtgcttatgtataagctatttctatagccaaaaagataaaataaagttaaat 44600525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 44786548 - 44786490
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||||||||||||||||| || |   ||||||||||| ||||||||||    
T  44786548 catggtaagcacttatgtataagctatttctacaattaaagataaaattaagttaaatt 44786490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 5133710 - 5133755
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaaa 316  Q
    |||||||||||||||||| ||||  |||||||||||||||| ||||    
T  5133710 cttatgtataagctatttctataacaaaagataaaataaagataaa 5133755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 7928435 - 7928390
Alignment:
Q  262 tgataagcacttatgtataagctatttttataggaaaagataaaat 307  Q
    ||||||||||||||| ||||||||||| ||| | ||||||||||||    
T  7928435 tgataagcacttatgaataagctatttctattgcaaaagataaaat 7928390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 9551513 - 9551558
Alignment:
Q  267 agcacttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||||||||||||  |||  ||||||||||||    
T  9551513 agcacttatgtataagctatttttataataaattataaaataaagt 9551558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 28677780 - 28677743
Alignment:
Q  275 tgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||| | |||||||||||||||||    
T  28677780 tgtataagctatttttattgtaaaagataaaataaagt 28677743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 7282957 - 7282997
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||||||| ||||||| ||||| ||||    
T  7282957 ttatgtataagctatttttataagaaaagaaaaaatgaagt 7282997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 12464598 - 12464558
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| | ||| |||||||||||||||||||||||    
T  12464598 ataagctatttctgtagaaaaagataaaataaagttaaatt 12464558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 13325515 - 13325555
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||| |||||||| ||| |||||||||||||||||||    
T  13325515 ataagctagttttatagaaaatgataaaataaagttaaatt 13325555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 15305602 - 15305642
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| ||| |||||||||| ||||||||    
T  15305602 ataagctatttttatagcaaatgataaaataatgttaaatt 15305642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 32592532 - 32592572
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||||| |||||||||||||| ||||||||    
T  32592532 ataaactatttttatagaaaaagataaaataatgttaaatt 32592572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 43141497 - 43141541
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagttaaa 316  Q
    ||||||||||||||||| || || || ||||||||||||||||||    
T  43141497 ttatgtataagctatttctagagcaatagataaaataaagttaaa 43141541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 9093705 - 9093641
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| |||||||||| |||||| ||||||||||| ||||  |||||||||||||||||||||||    
T  9093705 acttatcatgataagcgcttatggataagctatttctatatcaaaagataaaataaagttaaatt 9093641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 24476530 - 24476587
Alignment:
Q  261 atgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||  |||||||||    
T  24476530 atgataaacacttatgtataagctatttctatagcaaaagataaaatgtagttaaatt 24476587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 4163096 - 4163160
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| |||||||| ||||||   ||||||||||||||||| || ||||||||||||||||||||    
T  4163096 acttatcatgataaacacttacacataagctatttttatagaaatagataaaataaagttaaatt 4163160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 4224717 - 4224781
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| |||||||| ||||||   ||||||||||||||||| || ||||||||||||||||||||    
T  4224717 acttatcatgataaacacttacacataagctatttttatagaaatagataaaataaagttaaatt 4224781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 9559681 - 9559626
Alignment:
Q  263 gataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||| |||||||||||| ||||| ||||| ||||||||||||||| |||||||    
T  9559681 gataagcgcttatgtataagttatttctatagcaaaagataaaataaatttaaatt 9559626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 29274361 - 29274314
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  29274361 cttatgtataagctatttctatagcaaaagataaaataaagtcaaatt 29274314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 33117464 - 33117527
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| ||| ||||||||||||| |||||||| |||||||| |||| ||||||| ||||||||||    
T  33117464 cttatcataataagcacttatgcataagctacttttatagcaaaatataaaattaagttaaatt 33117527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 264293 - 264355
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaat 317  Q
    |||| |||||||||  ||||| |||||||||||| || || ||||||||||||||||||||||    
T  264293 cttatcatgataagtgcttatatataagctatttctaaagcaaaagataaaataaagttaaat 264355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 11363494 - 11363453
Alignment:
Q  277 tataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  11363494 tataagctatttttaaaagaaaagataaaataaagttaaatt 11363453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 430509 - 430461
Alignment:
Q  270 acttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||||| ||||  ||||||| |||||||||||||||    
T  430509 acttatgtataagctatttctatataaaaagatgaaataaagttaaatt 430461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 8147647 - 8147687
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  8147647 ataagctatttttatagcaaaagataaaataaagttgaatt 8147687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 33736759 - 33736823
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| |||||| |||||||||||||||| ||||| ||||  | || ||||||||||||||||||    
T  33736759 acttatcatgatcagcacttatgtataagttatttctataacataacataaaataaagttaaatt 33736823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 3217322 - 3217275
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||||||| || || ||||||||||||||| |||||    
T  3217322 cttatgtataagctatttttgtaagagaagataaaataaagtcaaatt 3217275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 10616839 - 10616796
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagtta 314  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||    
T  10616839 cttatgtataatctatttttatagtaaaagataaaatgaagtta 10616796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 32206168 - 32206105
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||||||||||| |||||||| | |||   ||||||| |||||||||||||||    
T  32206168 cttatcatgataagcacttatgtgtaagctatctctatgacaaaagatgaaataaagttaaatt 32206105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 2027940 - 2027895
Alignment:
Q  267 agcacttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||| ||||||||||||||| ||  |||||||||||||||||    
T  2027940 agcacttacgtataagctatttttgtattaaaagataaaataaagt 2027895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 2514640 - 2514681
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  2514640 cttatgtataagctatttctataataaaagataaaataaagt 2514681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 20370839 - 20370876
Alignment:
Q  273 tatgtataagctatttttataggaaaagataaaataaa 310  Q
    |||||||||||||||||||||  |||||||||||||||    
T  20370839 tatgtataagctatttttataacaaaagataaaataaa 20370876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 23063671 - 23063618
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagtt 313  Q
    ||||||||||  |||||||||| |||||||||||| ||||||| |||| |||||    
T  23063671 catgataagcgtttatgtataacctatttttatagcaaaagatgaaatgaagtt 23063618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 33416323 - 33416360
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaata 308  Q
    |||||||||||||||||||||||  |||||||||||||    
T  33416323 cttatgtataagctatttttataacaaaagataaaata 33416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 103383 - 103435
Alignment:
Q  263 gataagcacttatgtataagctatttttataggaaaagataaaataaagttaa 315  Q
    ||||| |||||| ||||||||||||| ||||| ||||||||| || |||||||    
T  103383 gataaacacttacgtataagctatttctatagcaaaagataatatgaagttaa 103435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 781316 - 781364
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||| ||| ||||||||||||||| ||||  |||||||||||||||||    
T  781316 ataagtactaatgtataagctatttctataataaaagataaaataaagt 781364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 2206521 - 2206569
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||||| || |||||||| ||||||||||  |||||||||||||||||    
T  2206521 ataagcatttctgtataagttatttttataacaaaagataaaataaagt 2206569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 3171570 - 3171522
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||| |||||| ||||||||||||||||  |||||||||||| ||||    
T  3171570 ataagcgcttatgcataagctatttttataacaaaagataaaattaagt 3171522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 10645455 - 10645411
Alignment:
Q  274 atgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||| ||||| ||| |||||||| ||||||||||    
T  10645455 atgtataagctatttctatagcaaacgataaaatgaagttaaatt 10645411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 24626240 - 24626280
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| ||||||||| ||||||| |||||||||||    
T  24626240 ataagctatttctataggaaaggataaaacaaagttaaatt 24626280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 30536683 - 30536643
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| ||||||||| |||| ||||||||    
T  30536683 ataagctatttttatagcaaaagataagataacgttaaatt 30536643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 33911412 - 33911368
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagttaaa 316  Q
    |||||||||| |||||||||||  ||||||| |||||||||||||    
T  33911412 ttatgtataatctatttttataacaaaagatcaaataaagttaaa 33911368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 35070755 - 35070723
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaa 310  Q
    ||||||||||||||||| |||||||||||||||    
T  35070755 ataagctatttttatagaaaaagataaaataaa 35070723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 28776896 - 28776955
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagtt 313  Q
    ||||| |||||||||  |||||||||||||||||||||| | ||||||||||||||||||    
T  28776896 acttatcatgataagtgcttatgtataagctatttttattgaaaaagataaaataaagtt 28776955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 465881 - 465939
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||| |||||||||||| |||   |||||||||||||||||||||||    
T  465881 catgataagcacttatatataagctatttctatgacaaaagataaaataaagttaaatt 465939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 706394 - 706448
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||    
T  706394 ataagcgcttatgtataagctatttctatagtaaaagataaaatatagttaaatt 706448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 4014567 - 4014513
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagtta 314  Q
    |||||||||| | |||||||||||||||| ||||| |||||||||||||||||||    
T  4014567 catgataagcgcctatgtataagctatttctatagcaaaagataaaataaagtta 4014513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 7674575 - 7674633
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||| |||||||||||| ||||  ||||||||||||||| |||||||    
T  7674575 catgataagcacttatatataagctatttctataccaaaagataaaataaatttaaatt 7674633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 12425498 - 12425556
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||| | ||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  12425498 catgataaacgcttatgtataaactatttatatagtaaaagataaaataaagttaaatt 12425556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 14932231 - 14932275
Alignment:
Q  274 atgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||| |||||||||||| |||||||||||||||||||||||    
T  14932231 atgtataatctatttttatagcaaaagataaaataaagttaaatt 14932275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 40590457 - 40590508
Alignment:
Q  263 gataagcacttatgtataagctatttttataggaaaagataaaataaagtta 314  Q
    ||||||| ||||||||||||||| || ||||| |||||||||||||||||||    
T  40590457 gataagcgcttatgtataagctacttctatagaaaaagataaaataaagtta 40590508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 1465159 - 1465105
Alignment:
Q  263 gataagcacttatgtataagctatttttataggaaaagataaaataaagttaaat 317  Q
    ||||||| |||||||||||||||||| ||||| | | ||||||||||||||||||    
T  1465159 gataagcgcttatgtataagctatttctatagcataggataaaataaagttaaat 1465105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 3566473 - 3566403
Alignment:
Q  248 acaaagacttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| ||||| |||||||||||||||  |||||||||||| ||||   ||||| ||||||||||||||||    
T  3566473 acaaacacttatcatgataagcacttacctataagctatttctatacccaaagagaaaataaagttaaatt 3566403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 4855629 - 4855683
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| |||||||||| |||||||||||||  |||| ||||||||||||||||||    
T  4855629 ataagtacttatgtattagctatttttataacaaaaaataaaataaagttaaatt 4855683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 293
Target Start/End: Original strand, 6096465 - 6096503
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttata 293  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  6096465 cttatcatgataagcacttatgtataagctatttttata 6096503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 9202891 - 9202833
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||  ||||| |||||||||||| | ||| |||||||||||||||||||||||    
T  9202891 catgataagtgcttatatataagctatttctgtagcaaaagataaaataaagttaaatt 9202833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 34112803 - 34112857
Alignment:
Q  261 atgataagcacttatgtataagctatttttataggaaaagataaaataaagttaa 315  Q
    ||||||||| |||||||||||||||||| ||||| ||||||| || |||||||||    
T  34112803 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaa 34112857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 34736681 - 34736612
Alignment:
Q  248 acaaagacttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||||  |||||||| ||||||    
T  34736681 acaaacacttaccatgataatcacttatgcataagctatttctatagcaaaaga-gaaataaagctaaatt 34736612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 42569128 - 42569071
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||| |||||||||| |||||| | ||||||||| ||||| |||||||||||||||||    
T  42569128 cttatcatgataagcgcttatgaaaaagctatttctatagcaaaagataaaataaagt 42569071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 9107057 - 9107097
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  9107057 ataagctatttttaaagaaaaagataaaataaagttaaatt 9107097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 12554408 - 12554448
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  12554408 ataagctatttttatagtaaatgataaaataaagttaaatt 12554448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 35446000 - 35446040
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  35446000 ataagctatttttatagcaaatgataaaataaagttaaatt 35446040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 37112395 - 37112343
Alignment:
Q  266 aagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||||||||||| || || ||||||||||| |||||||||||    
T  37112395 aagcgcttatgtataagctatttctacagcaaaagataaaacaaagttaaatt 37112343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 42500350 - 42500310
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  42500350 ataagctatttttatatcaaaagataaaataaagttaaatt 42500310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 11835199 - 11835262
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||   |||||||||| | |||||||||  |||||||||||||||||||||||    
T  11835199 cttatcatgataagtgtttatgtataaaccatttttataacaaaagataaaataaagttaaatt 11835262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 19460534 - 19460471
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||||||||||||||| |||||| ||||  |||| ||  ||||||||||||||    
T  19460534 cttatcatgataagcacttatgtataaactatttctatatcaaaacattgaataaagttaaatt 19460471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 39105386 - 39105449
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||| |||||||||||||||||| |||||  ||| || |||| ||||||||||    
T  39105386 cttatcatgataagcgcttatgtataagctatttctatagctaaatatgaaatgaagttaaatt 39105449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 40864660 - 40864707
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| |||| ||||||||||||| | |||||||||||||||||||||    
T  40864660 cttatatataggctatttttatagcataagataaaataaagttaaatt 40864707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 5963425 - 5963367
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||| |||||||| || |||||| ||||   ||||||||||||||||||||||    
T  5963425 catgataagcgcttatgtacaaactatttctataatgaaagataaaataaagttaaatt 5963367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 7096259 - 7096218
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  7096259 cttatgtataagctatttctataacaaaagataaaataaagt 7096218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 11054124 - 11054165
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  11054124 cttatgtataagctatttctataataaaagataaaataaagt 11054165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 11615452 - 11615493
Alignment:
Q  277 tataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||||  ||||||||||||||||| |||||    
T  11615452 tataagctatttttataacaaaagataaaataaagtcaaatt 11615493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 24029999 - 24030044
Alignment:
Q  270 acttatgtataagctatttttataggaaaagataaaataaagttaa 315  Q
    ||||||||||||||||||| ||||| |||||| || ||||||||||    
T  24029999 acttatgtataagctatttctatagcaaaagagaatataaagttaa 24030044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 3932810 - 3932770
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| |||||||||||| ||||| ||||    
T  3932810 ataagctatttttatagcaaaagataaaatgaagtttaatt 3932770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 6593229 - 6593285
Alignment:
Q  262 tgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| || ||||||||||| | |||| ||||  |||||||||||||||||||||||    
T  6593229 tgatacgcgcttatgtataaacaatttctataacaaaagataaaataaagttaaatt 6593285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 12407792 - 12407752
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||||||||||||||| ||||  |||||||||||||||||    
T  12407792 ttatgtataagctatttctataacaaaagataaaataaagt 12407752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 29925786 - 29925826
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| |||||||||||||  ||||||||    
T  29925786 ataagctatttttatagcaaaagataaaatagcgttaaatt 29925826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 42100009 - 42099954
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaa 310  Q
    ||||| |||||||||  |||||||||||||||||| ||||| |||| ||||||||||    
T  42100009 acttatcatgataagtgcttatgtataagctatttatatagcaaaa-ataaaataaa 42099954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 44061162 - 44061108
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||    
T  44061162 ataagcacttctgtataagctatttctatagcaaaagataaaataaggttaaatt 44061108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 30574055 - 30574002
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaa 315  Q
    |||||||||| |||||||||||||||||| ||||  ||||||||||||||||||||    
T  30574055 catgataagcgcttatgtataagctatttctata--aaaagataaaataaagttaa 30574002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 34235224 - 34235164
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaa 315  Q
    |||| ||||||||||||||||||| |||||||||  |||| |||| |||||||||||||||    
T  34235224 cttatcatgataagcacttatgtagaagctatttccatagcaaaatataaaataaagttaa 34235164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 46030915 - 46030971
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaa 316  Q
    |||||||| ||||||| ||||||||||||  |||| |||||||||||||||||||||    
T  46030915 catgataaacacttatatataagctatttcgatagaaaaagataaaataaagttaaa 46030971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 2128382 - 2128336
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||||    
T  2128382 ttatgtataagctatttctataacaaaagataaaataaagttaaatt 2128336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 34638114 - 34638049
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaa-taaagttaaatt 318  Q
    ||||| |||||||| | ||||| |||||||||||| ||||| ||||||||||| ||||||||||||    
T  34638114 acttatcatgataaccgcttatatataagctatttctatagaaaaagataaaattaaagttaaatt 34638049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 49465812 - 49465751
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaa 315  Q
    ||||| ||||| || | ||||||| |||||||||||||||  ||||||||||||||||||||    
T  49465812 acttatcatgagaaacgcttatgtgtaagctatttttataacaaaagataaaataaagttaa 49465751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 23808192 - 23808140
Alignment:
Q  262 tgataagcacttatgtataagctatttttataggaaaagataaaataaagtta 314  Q
    ||||| ||||||||||||||||||||||||||  || || |||||||||||||    
T  23808192 tgataggcacttatgtataagctatttttataacaataggtaaaataaagtta 23808140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 23815975 - 23816036
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| ||||||||||||||||||||||| ||||| ||||  |||||||  ||||||||||||||    
T  23815975 cttatcatgataagcacttatgtataagttatttctataataaaagat--aataaagttaaatt 23816036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 30956751 - 30956711
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  30956751 ataagctatttctatagcaaaagataaaataaagttaaatt 30956711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 30972563 - 30972523
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  30972563 ataagctatttctatagcaaaagataaaataaagttaaatt 30972523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 25447392 - 25447329
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| ||||| |||||||| ||| ||| |||||| ||||| ||||||||||||||| |||||||    
T  25447392 cttatcatgagaagcacttttgtgtaaactatttctatagtaaaagataaaataaacttaaatt 25447329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 37389122 - 37389161
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttata 293  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  37389122 acttatcatgataagcacttatgtataagctatttatata 37389161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 39602341 - 39602294
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||| ||||||||||| ||||| ||||||||| |||||||||||||    
T  39602341 cttatgcataagctatttctatagaaaaagataacataaagttaaatt 39602294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 8142841 - 8142803
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaa 310  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  8142841 ttatgtataagctatttttatatcaaaagataaaataaa 8142803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 30669101 - 30669055
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||||||||  |||||||||||||| ||| ||||    
T  30669101 ttatgtataagctatttttataacaaaagataaaataatgttgaatt 30669055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 402689 - 402640
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataa 304  Q
    |||| |||||||||  |||||||||||||||||| ||||| |||||||||    
T  402689 cttatcatgataagggcttatgtataagctatttctatagaaaaagataa 402640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 1395611 - 1395656
Alignment:
Q  273 tatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||||| ||||  ||||||||||||||||| |||||    
T  1395611 tatgtataagctatttctataacaaaagataaaataaagtcaaatt 1395656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 20192738 - 20192697
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  20192738 cttatgtataagctatttatataacaaaagataaaataaagt 20192697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 293
Target Start/End: Original strand, 20669106 - 20669139
Alignment:
Q  260 catgataagcacttatgtataagctatttttata 293  Q
    ||||||||||||||||||||||||||||| ||||    
T  20669106 catgataagcacttatgtataagctatttctata 20669139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 31403280 - 31403341
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaa 316  Q
    |||| ||| |||||||||||| ||||||||||||  |||  |||||||||||| ||||||||    
T  31403280 cttatcatcataagcacttatatataagctatttccatatcaaaagataaaatgaagttaaa 31403341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 46778353 - 46778312
Alignment:
Q  277 tataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||| ||||| || ||||||||||||||||||||    
T  46778353 tataagctatttctatagcaagagataaaataaagttaaatt 46778312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 905109 - 905061
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||| |||| ||||||||||||| ||||  |||||||||||||||||    
T  905109 ataagcgcttaagtataagctatttctataacaaaagataaaataaagt 905061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 15304472 - 15304432
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| ||||  |||||||||||||||||||||||    
T  15304472 ataagctatttctataacaaaagataaaataaagttaaatt 15304432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 24684948 - 24684916
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaa 310  Q
    ||||||||||||||||| |||||||||||||||    
T  24684948 ataagctatttttatagaaaaagataaaataaa 24684916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 32582257 - 32582309
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaat 307  Q
    |||| ||||| |||| | ||| |||||||||||||||||| ||||||||||||    
T  32582257 cttatcatgacaagctcatatttataagctatttttatagcaaaagataaaat 32582309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 35959581 - 35959541
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| ||||| ||| |||||||||||||||||||    
T  35959581 ataagctatttctatagaaaaggataaaataaagttaaatt 35959541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 37689509 - 37689469
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||  |||||||||| ||||||||||||    
T  37689509 ataagctatttttataacaaaagataaagtaaagttaaatt 37689469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 42809242 - 42809286
Alignment:
Q  274 atgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||| ||||  ||||||||||||| |||||||||    
T  42809242 atgtataagctatttctataacaaaagataaaatatagttaaatt 42809286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 48397587 - 48397631
Alignment:
Q  274 atgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||||    
T  48397587 atgtataagttatttttataataaaagataaaataaagtcaaatt 48397631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 46252825 - 46252767
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||| ||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  46252825 catgatatgcactaatgtataggctatttttataacaaaagataaaataaagttaaatt 46252767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 17420134 - 17420182
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||||||||    
T  17420134 ataagtacttatgtataaactatttttataagaaaagataaaataaagt 17420182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 45975605 - 45975665
Alignment:
Q  248 acaaagacttaccatgataagcacttatgtataagctatttttataggaaaagataaaata 308  Q
    ||||| ||||| |||||||||| ||||||||||| |||||| ||||||||| |||||||||    
T  45975605 acaaacacttatcatgataagcccttatgtataaactatttatataggaaaggataaaata 45975665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 47432041 - 47432081
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  47432041 ataagctatttttatagaaaaagataaaataaagttaaatt 47432081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 3887764 - 3887717
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  3887764 cttatgtataagctatttcaatagcaaaagataaaataaagttaaatt 3887717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 8852782 - 8852841
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagtta 314  Q
    |||| |||||||| |||| |||||||||||||||||| |  |||||||||||||||||||    
T  8852782 cttatcatgataaacactaatgtataagctatttttacaacaaaagataaaataaagtta 8852841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 1432446 - 1432500
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||| |||| ||||    
T  1432446 ataagcacatatgtataagctatttctatagtaaaagataaaatagagttcaatt 1432500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 4700205 - 4700155
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagtta 314  Q
    ||||||||||||||| ||||||||| ||||  |||||||||||||||||||    
T  4700205 ataagcacttatgtacaagctatttctataacaaaagataaaataaagtta 4700155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 9572251 - 9572193
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||| ||| || |||||| |||||||| ||||| |||||||||||||||||||||||    
T  9572251 catgatcagcgctaatgtattagctatttctatagcaaaagataaaataaagttaaatt 9572193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 23544783 - 23544725
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||| |||||||||||||||||| ||| | |||||||||||| |||| |||||    
T  23544783 catgataagcgcttatgtataagctatttctatggaaaaagataaaattaagtcaaatt 23544725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 30581729 - 30581787
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| ||||  ||||||||||||||||| ||| ||| |||||||||||||||    
T  30581729 catgataagcagttatacataagctatttttatagaaaacgatgaaataaagttaaatt 30581787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 36070181 - 36070235
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||| |||||||||  ||||||||||||  |||||||||||||||||||||||    
T  36070181 ataagcgcttatgtatgggctatttttataacaaaagataaaataaagttaaatt 36070235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 45145165 - 45145211
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||||    
T  45145165 ttatgtataagctatttttatagcaaaagataaaataatattaaatt 45145211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 51190788 - 51190846
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||| ||||||| || ||||||||| || || |||||||||||||||||||||||    
T  51190788 catgataaacacttatttaaaagctatttgtaaagcaaaagataaaataaagttaaatt 51190846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 836481 - 836432
Alignment:
Q  261 atgataagcacttatgtataagctatttttataggaaaagataaaataaa 310  Q
    ||||||| ||||||||| ||||||||||||||||  ||||||||||||||    
T  836481 atgataaacacttatgtgtaagctatttttatagtgaaagataaaataaa 836432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 9656561 - 9656635
Alignment:
Q  248 acaaagacttaccatgataagcacttatgtataagc----tatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| ||||| |||||||||||| |||||||||||    ||||| ||||| |||| ||||||||||||||||||    
T  9656561 acaaacacttatcatgataagcacctatgtataagctatttatttctatagcaaaaaataaaataaagttaaatt 9656635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 7028230 - 7028274
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaa 315  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||    
T  7028230 cttatgtataaactatttctatagcaaaagataaaataaagttaa 7028274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 30043896 - 30043856
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  30043896 ataagctatttctataggaaaagataaaataatgttaaatt 30043856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 37841919 - 37841983
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| ||||||||| ||| ||||||||||||||  ||||  ||| |||||||||||||||||||    
T  37841919 acttatcatgataagtactcatgtataagctattcctataacaaatgataaaataaagttaaatt 37841983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 41163145 - 41163089
Alignment:
Q  262 tgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||| ||||||||| || ||||||||| | |||||||||||| ||||||||||    
T  41163145 tgataagcgcttatgtatgagttatttttattgcaaaagataaaatgaagttaaatt 41163089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 289178 - 289225
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| ||||||||||||||| ||| ||||||||||||||||| |||||    
T  289178 cttaagtataagctatttttgtagcaaaagataaaataaagtcaaatt 289225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 4549804 - 4549851
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||| ||||||||| ||||  |||||||||||||||||||||||    
T  4549804 cttatgtacaagctatttctataacaaaagataaaataaagttaaatt 4549851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 29904703 - 29904742
Alignment:
Q  277 tataagctatttttataggaaaagataaaataaagttaaa 316  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  29904703 tataagctatttttatagcaaaagataaaataaatttaaa 29904742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 37842485 - 37842442
Alignment:
Q  273 tatgtataagctatttttataggaaaagataaaataaagttaaa 316  Q
    |||||||||||||||| ||||| ||||||| |||||||||||||    
T  37842485 tatgtataagctatttctatagcaaaagatgaaataaagttaaa 37842442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 46499986 - 46499939
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| |||||||||||| |||| |||||||||||||||||| |||||    
T  46499986 cttatctataagctatttctataagaaaagataaaataaagtcaaatt 46499939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 2294842 - 2294896
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||| |||||| ||||| ||||||||||||||| ||| | |||||||||||||    
T  2294842 ataagcgcttatgaataaggtatttttataggaaatgatcatataaagttaaatt 2294896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 4445639 - 4445693
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| ||||||| ||||  |||| ||| ||||||||||||||    
T  4445639 ataagcacttatgtataggctatttctataacaaaaaatacaataaagttaaatt 4445693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 15784263 - 15784321
Alignment:
Q  261 atgataagcacttatgtataagctatttttatag-gaaaagataaaataaagttaaatt 318  Q
    ||||||||| |||||||||||||||||| || ||  ||||| |||||||||||||||||    
T  15784263 atgataagcgcttatgtataagctatttctaaagtaaaaaggtaaaataaagttaaatt 15784321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 15942255 - 15942305
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaa 305  Q
    |||| |||||||||  |||||||||||||||||| ||||| ||||||||||    
T  15942255 cttatcatgataagtgcttatgtataagctatttatatagaaaaagataaa 15942305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 27146391 - 27146333
Alignment:
Q  260 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||  ||||||||||| ||||| || || ||||||||||||||| |||||||    
T  27146391 catgataagcgtttatgtataaggtatttctacagcaaaagataaaataaatttaaatt 27146333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 50319229 - 50319271
Alignment:
Q  270 acttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||||||||||||||||| ||||  |||||||||||||||||    
T  50319229 acttatgtataagctatttctataacaaaagataaaataaagt 50319271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 17830099 - 17830136
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaa 315  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  17830099 ataagctatttttatagcaaatgataaaataaagttaa 17830136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 26184683 - 26184736
Alignment:
Q  265 taagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||||| |||||| |||| |||||| ||||||||||| |||||    
T  26184683 taagtacttatgtataaactatttctataagaaaaggtaaaataaagtcaaatt 26184736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 30582073 - 30582036
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaa 315  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  30582073 ataaggtatttttatagaaaaagataaaataaagttaa 30582036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 172709 - 172665
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagttaa 315  Q
    |||||||||||||||||| ||||  ||||||||| ||||||||||    
T  172709 cttatgtataagctatttctataacaaaagataacataaagttaa 172665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 5894311 - 5894251
Alignment:
Q  255 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaa 315  Q
    |||| |||||||||| |||||||||||||||||| ||| |    |||||||||||||||||    
T  5894311 cttatcatgataagcgcttatgtataagctatttctatggtggcagataaaataaagttaa 5894251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 7069229 - 7069273
Alignment:
Q  262 tgataagcacttatgtataagctatttttataggaaaagataaaa 306  Q
    ||||||||||||| ||||||||||||  ||||| |||||||||||    
T  7069229 tgataagcacttaagtataagctattactatagcaaaagataaaa 7069273  T

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Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 7137142 - 7137090
Alignment:
Q  262 tgataagcacttatgtataagctatttttataggaaaagataaaataaagtta 314  Q
    |||||||| ||||| ||||| |||||||||||  ||||| |||||||||||||    
T  7137142 tgataagcgcttatatataaactatttttataacaaaagttaaaataaagtta 7137090  T

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Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 30191937 - 30191973
Alignment:
Q  279 taagctatttttataggaaaagataaaataaagttaa 315  Q
    |||||||||||||||| |||| |||||||||||||||    
T  30191937 taagctatttttatagcaaaaaataaaataaagttaa 30191973  T

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Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 33339551 - 33339507
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagttaaa 316  Q
    ||||||||||||||||| ||||  |||||||||||| ||||||||    
T  33339551 ttatgtataagctatttctataccaaaagataaaatgaagttaaa 33339507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 34952148 - 34952200
Alignment:
Q  266 aagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||| |||||||||||||||| || || | ||| |||||||||||||||||    
T  34952148 aagcacctatgtataagctatttctagagcagaagttaaaataaagttaaatt 34952200  T

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Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 35017505 - 35017553
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    ||||| ||||||| ||||||||||||||||  | |||||||||||||||    
T  35017505 ataagaacttatgaataagctatttttataatacaagataaaataaagt 35017553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 36643145 - 36643109
Alignment:
Q  275 tgtataagctatttttataggaaaagataaaataaag 311  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  36643145 tgtataagctatttgtatagcaaaagataaaataaag 36643109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 43722452 - 43722400
Alignment:
Q  266 aagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||||||||||| ||||  | |||||||||||||||| ||||    
T  43722452 aagcgcttatgtataagctatttatataacagaagataaaataaagttcaatt 43722400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 45990187 - 45990143
Alignment:
Q  274 atgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||| ||||||||||||  ||||||||||||||||| |||||    
T  45990187 atgtatatgctatttttatatcaaaagataaaataaagtaaaatt 45990143  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 40009391 - 40009455
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| |||||| ||| |||||||||||||| ||||||||  |||||| ||||||||||||||||    
T  40009391 acttatcatgattagcgcttatgtataagctgtttttataacaaaagacaaaataaagttaaatt 40009455  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 28613665 - 28613619
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||||    
T  28613665 ttatgtataagctatttttataacaaaagataaaacaaagttaaatt 28613619  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 36874104 - 36874058
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaa 310  Q
    ||||||||||||||||||||||||| |||| |||| |||||||||||    
T  36874104 ataagcacttatgtataagctatttctataagaaatgataaaataaa 36874058  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 19214533 - 19214492
Alignment:
Q  261 atgataagcacttatgtataagctatttttataggaaaagat 302  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  19214533 atgataagaacttatgtataagctatttttatagcaaaagat 19214492  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 42656446 - 42656499
Alignment:
Q  264 ataagcacttatgtataagctatttttataggaaaagataaaataaagttaaat 317  Q
    |||||||||||| |||||||||||| ||||  ||||||||||||||||| ||||    
T  42656446 ataagcacttatatataagctatttctataacaaaagataaaataaagtcaaat 42656499  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 43250828 - 43250767
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaa 315  Q
    ||||||||||||||||  ||||||||||||||| | || |  ||||||||||||||||||||    
T  43250828 acttaccatgataagcctttatgtataagctatgtctagaacaaaagataaaataaagttaa 43250767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 119855 - 119895
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  119855 ataagctatttctacaggaaaagataaaataaagttaaatt 119895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 20881785 - 20881721
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| |||||||||| ||||||||| |||||| | ||||| |||||||||||  ||||||||||    
T  20881785 acttatcatgataagctcttatgtatgagctatatctatagcaaaagataaaacgaagttaaatt 20881721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 45004711 - 45004751
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  45004711 ataaactatttttatagcaaaagataaaataaagttaaatt 45004751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 45806451 - 45806411
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  45806451 ataagctatttttatagcaaaagataaaataacgttaaatt 45806411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 33552970 - 33552931
Alignment:
Q  254 acttaccatgataagcacttatgtataagctatttttata 293  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  33552970 acttaccatgataagcgcttatgtataagctatttctata 33552931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 318
Target Start/End: Complemental strand, 43153030 - 43152987
Alignment:
Q  275 tgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||||||| ||||  |||||||||||||||||||||||    
T  43153030 tgtataagctatttctataacaaaagataaaataaagttaaatt 43152987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 3968330 - 3968280
Alignment:
Q  268 gcacttatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| ||||||||| ||||| ||||| ||||||||||||||| |||||||    
T  3968330 gcactgatgtataagttatttctatagcaaaagataaaataaatttaaatt 3968280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 5276162 - 5276203
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||||||||  ||||||||| |||||||    
T  5276162 cttatgtataagctatttttataacaaaagataacataaagt 5276203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 31341132 - 31341173
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  31341132 cttatgtataagctatttgtataacaaaagataaaataaagt 31341173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 30133988 - 30134028
Alignment:
Q  272 ttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||||| |  |||||||||||||||||    
T  30133988 ttatgtataagctatttttacaacaaaagataaaataaagt 30134028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 33673006 - 33673054
Alignment:
Q  261 atgataagcacttatgtataagctatttttataggaaaagataaaataa 309  Q
    ||||||||| ||||||||||||||| || ||||| ||| ||||||||||    
T  33673006 atgataagcgcttatgtataagctacttctatagcaaaggataaaataa 33673054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 40689107 - 40689071
Alignment:
Q  282 gctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  40689107 gctatttctatagcaaaagataaaataaagttaaatt 40689071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 46078092 - 46078132
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||| ||||||||||| ||||||||||| |||||||||||    
T  46078092 ataagttatttttatagaaaaagataaaacaaagttaaatt 46078132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 1206 - 1165
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  1206 cttatgtataagctatttctataacaaaagataaaataaagt 1165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 2769 - 2810
Alignment:
Q  271 cttatgtataagctatttttataggaaaagataaaataaagt 312  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  2769 cttatgtataagctatttctataacaaaagataaaataaagt 2810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 51508 - 51553
Alignment:
Q  273 tatgtataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    |||||||||| ||||||||||  |||| ||||||||||||||||||    
T  51508 tatgtataagttatttttataacaaaatataaaataaagttaaatt 51553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 158052 - 158092
Alignment:
Q  278 ataagctatttttataggaaaagataaaataaagttaaatt 318  Q
    ||||||||||||||||| |||| ||||| ||||||||||||    
T  158052 ataagctatttttatagaaaaacataaattaaagttaaatt 158092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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