View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18019_high_9 (Length: 238)
Name: NF18019_high_9
Description: NF18019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18019_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 48681238 - 48681463
Alignment:
| Q |
1 |
tcaaagaacttcaaagttattaaaattgaatgaccaagttaaagaccat-cttccaaacaatcatgacaggaaaacaacatggttcaattatagtttcca |
99 |
Q |
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| T |
48681238 |
tcaaagaacttcaaagttattaaaattgaatgaccaagttaaagaccatgcttccaaacaatcatgacatgaaaacaacatggttcaattatagtttcca |
48681337 |
T |
|
| Q |
100 |
aaacaggcgggcaagccaaataataagtcacagtacattagaatcttgtcgaatcaagcaaaataaccatcttctaaaccatcattcattagaatataac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48681338 |
aaacaggcgggcaagccaaataataagtcacagtacgttagaatcttgttgaatcaagcaaaataaccatcttctaaaccatcattgattagaatataac |
48681437 |
T |
|
| Q |
200 |
ataaaaatacattcagaacagttgat |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
48681438 |
ataaaaatacattcagaacagttgat |
48681463 |
T |
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