View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18019_low_1 (Length: 617)
Name: NF18019_low_1
Description: NF18019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18019_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 15 - 598
Target Start/End: Original strand, 38284636 - 38285212
Alignment:
| Q |
15 |
cagagatcagtgacgtggggacaaacaaggaggtgcaagagctagggaagtttgcggtgaaggagtacaactacaaacaaggtttgaacaacggcggcgg |
114 |
Q |
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| T |
38284636 |
cagagatcagtgacgtggggacaaacaaggaggtgcaagagctagggaagtttgcggtgaaggagtacaactacaaacaaggtttgaacaacggcggcgg |
38284735 |
T |
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| Q |
115 |
tggagaggggttgaagttcgtggaagtggtggaggctgagcagcaagtggtgtctgggatgaaatactatctcaacatctcagccgttgatcataatggt |
214 |
Q |
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| T |
38284736 |
cggagaggggttgaagttcgtggaagtggtggaggctgagcagcaagtggtgtctgggatgaaatactatctcaacatctcagccgttgatcataatggt |
38284835 |
T |
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| Q |
215 |
gttcaaagaatgtttaactctgttgtggtggttaagccgtggcttcatcagtacaagaaggttatccattttggtccttcatccaccttccaccaacata |
314 |
Q |
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| T |
38284836 |
gttcaaagaatgtttaactctgttgtggtggttaagccgtggcttcatcagtacaagaaggttatccattttggtccttcatccaccttccaccaacata |
38284935 |
T |
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| Q |
315 |
ctactatgtaattagaatttggacttggacctaaataagtaccactacatgtctatatggtttcttttactaga----tgcatatggcgcggtgtttgta |
410 |
Q |
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| T |
38284936 |
ctactatgtaattagaatttggacttggacctaaataagtaccactacatgtctatatggtttcttttactagatgcgtgcatatggcgcggtgtttgca |
38285035 |
T |
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| Q |
411 |
attgcaactgagttttttcctttcttcaattttatcaattaatnnnnnnntatattctctactgttttgtgtgg--tgtatatgtcaactaaaagaaatg |
508 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||| |||||||||||||||| |
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| T |
38285036 |
attgcaactgagttttttcctttcttcaattttatc---taa--------tatattctctactgttttgtgtggtatatatatttcaactaaaagaaatg |
38285124 |
T |
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| Q |
509 |
aaacaattaacatatattctaaagtgtttactactatctgtgatcttaatgcacaagattgctataggttgtcaaagattttactcacag |
598 |
Q |
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| T |
38285125 |
aaacaattaac--atatcctaaagtgtttactactatctgtgatcttaatgcacaagattgctataggttgtcaaagattttactcacag |
38285212 |
T |
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