View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18019_low_10 (Length: 237)
Name: NF18019_low_10
Description: NF18019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18019_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 32992407 - 32992198
Alignment:
| Q |
19 |
tattatttattatacttcaatttttctaactcgttcgtctcataataagtgacatatttgagatgtttataatgaga-cgggagagtaatagataaaaag |
117 |
Q |
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| T |
32992407 |
tattatttattatacttcaatttttctaactcgttcgtctcataataagtgacatatttgagatgcttataatgagatggggagagtaatagataaaaag |
32992308 |
T |
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| Q |
118 |
aagtaaaaagaaaatcacttgaaccaaccgtggataccgattcaaaccaattcaatctg----gttcaaacaaactgaagatcaaacaaactagtgaacc |
213 |
Q |
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| T |
32992307 |
aagtacaaagaaaatcgcttgagccaaccgtggatatcgattcaaaccaattcaatctggttcgttcaaccaaactgaagatcaaaccaactagtgaacc |
32992208 |
T |
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| Q |
214 |
ggttggttct |
223 |
Q |
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|||||||||| |
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| T |
32992207 |
ggttggttct |
32992198 |
T |
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