View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18019_low_11 (Length: 213)
Name: NF18019_low_11
Description: NF18019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18019_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 48681099 - 48680921
Alignment:
| Q |
18 |
ttctgaatgatgttcaaattccggaggtagtgttttaagcatttgcattttactctatttgttgcattgttaactatgccctcaatttaccgattagttt |
117 |
Q |
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| T |
48681099 |
ttctgaatgatgttcaaattccggaggtagtgttttaagcatttgcattttactctatttgttgcattgttaactatgccctcaatttaccgattagttt |
48681000 |
T |
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| Q |
118 |
cacatactacttgctttacatgttgttagatatattgaagaacgagcagtggaatctgaggttgttcaccttaggctgt |
196 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48680999 |
cacatactacttgctttacatgttgttagataaattgaagaacgagcagtggaatctgaggttgttcaccttaggctgt |
48680921 |
T |
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