View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18019_low_3 (Length: 477)

Name: NF18019_low_3
Description: NF18019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18019_low_3
NF18019_low_3
[»] chr5 (14 HSPs)
chr5 (300-461)||(2735701-2735862)
chr5 (40-171)||(2735960-2736093)
chr5 (324-416)||(31908795-31908884)
chr5 (239-286)||(2735847-2735894)
chr5 (95-171)||(7080547-7080624)
chr5 (111-171)||(8442176-8442236)
chr5 (111-171)||(43153054-43153114)
chr5 (104-171)||(12203164-12203231)
chr5 (104-169)||(35595973-35596038)
chr5 (115-171)||(9957199-9957255)
chr5 (104-155)||(20985516-20985567)
chr5 (109-171)||(38919869-38919929)
chr5 (104-153)||(12891083-12891132)
chr5 (111-155)||(22653688-22653732)
[»] chr3 (13 HSPs)
chr3 (95-168)||(43149321-43149394)
chr3 (104-171)||(35368628-35368695)
chr3 (104-171)||(29057665-29057732)
chr3 (104-171)||(50745566-50745633)
chr3 (109-171)||(29846883-29846945)
chr3 (104-171)||(48490500-48490567)
chr3 (104-154)||(11404947-11404997)
chr3 (104-142)||(32687947-32687985)
chr3 (109-171)||(43220133-43220195)
chr3 (109-171)||(49361827-49361889)
chr3 (95-152)||(27276770-27276827)
chr3 (104-153)||(45517644-45517693)
chr3 (95-155)||(20549363-20549423)
[»] chr4 (16 HSPs)
chr4 (104-171)||(7795031-7795098)
chr4 (104-171)||(31413773-31413840)
chr4 (109-171)||(36871160-36871222)
chr4 (111-171)||(1868887-1868947)
chr4 (104-155)||(6686079-6686130)
chr4 (104-155)||(29577423-29577474)
chr4 (109-171)||(54848155-54848217)
chr4 (104-168)||(9095957-9096021)
chr4 (111-171)||(24310515-24310575)
chr4 (111-171)||(46791985-46792045)
chr4 (111-155)||(51107435-51107479)
chr4 (104-155)||(4577590-4577641)
chr4 (104-155)||(36110167-36110218)
chr4 (104-165)||(46799779-46799840)
chr4 (95-171)||(21766564-21766640)
chr4 (95-171)||(27384193-27384269)
[»] chr1 (12 HSPs)
chr1 (104-171)||(50460699-50460766)
chr1 (104-168)||(35030749-35030813)
chr1 (104-171)||(11121498-11121565)
chr1 (104-171)||(16252746-16252813)
chr1 (104-153)||(8577489-8577538)
chr1 (111-171)||(30414881-30414941)
chr1 (104-152)||(48256943-48256991)
chr1 (104-155)||(14002729-14002780)
chr1 (104-155)||(31244720-31244771)
chr1 (109-171)||(3826807-3826869)
chr1 (95-171)||(4637942-4638018)
chr1 (63-91)||(36230194-36230222)
[»] chr2 (12 HSPs)
chr2 (105-171)||(11828808-11828874)
chr2 (104-171)||(45202119-45202186)
chr2 (104-171)||(40115532-40115599)
chr2 (95-171)||(27538893-27538970)
chr2 (95-171)||(6885458-6885534)
chr2 (104-171)||(22296116-22296183)
chr2 (104-171)||(38598336-38598403)
chr2 (95-168)||(8757564-8757637)
chr2 (109-154)||(28264562-28264607)
chr2 (104-153)||(38027602-38027651)
chr2 (109-170)||(38777909-38777970)
chr2 (104-152)||(19523388-19523436)
[»] chr6 (10 HSPs)
chr6 (107-155)||(7304115-7304163)
chr6 (104-171)||(9395324-9395391)
chr6 (104-171)||(16121169-16121236)
chr6 (104-171)||(2165287-2165354)
chr6 (104-171)||(2176920-2176987)
chr6 (111-169)||(17442841-17442899)
chr6 (109-171)||(32135423-32135485)
chr6 (106-147)||(8778861-8778902)
chr6 (104-153)||(22422185-22422234)
chr6 (111-171)||(25567484-25567544)
[»] scaffold0009 (1 HSPs)
scaffold0009 (104-155)||(5057-5108)
[»] chr7 (9 HSPs)
chr7 (104-171)||(24380708-24380775)
chr7 (104-171)||(25272608-25272675)
chr7 (104-171)||(27866524-27866591)
chr7 (109-171)||(33465031-33465093)
chr7 (104-155)||(17039190-17039241)
chr7 (104-171)||(37848607-37848674)
chr7 (104-171)||(38547277-38547344)
chr7 (104-171)||(40108141-40108208)
chr7 (104-171)||(49142504-49142571)
[»] chr8 (12 HSPs)
chr8 (95-171)||(14233622-14233698)
chr8 (104-171)||(6243051-6243118)
chr8 (104-171)||(13924028-13924095)
chr8 (104-171)||(25430663-25430730)
chr8 (109-171)||(41776192-41776254)
chr8 (104-153)||(27300381-27300430)
chr8 (107-171)||(38939179-38939243)
chr8 (104-155)||(20995045-20995096)
chr8 (96-166)||(30462700-30462771)
chr8 (104-171)||(37471660-37471727)
chr8 (109-171)||(23265346-23265408)
chr8 (104-153)||(22836126-22836175)
[»] scaffold0286 (1 HSPs)
scaffold0286 (104-171)||(17055-17122)
[»] scaffold0024 (1 HSPs)
scaffold0024 (95-155)||(48687-48747)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 300 - 461
Target Start/End: Complemental strand, 2735862 - 2735701
Alignment:
Q  300 agatagcctcattggatgtatatttaacattatcaattaatgatgatctgtgttgatatttgattctgcagaatgtcaaaacaaatattatagttaaaga 399  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2735862 agatagactcattggatgtatatttaacattatcaattaatgatgatctgtgttgatatttgattctgcagaatgtcaaaacaaatattatagttaaaga 2735763  T
Q  400 aatacaaaacttagaagnnnnnnngatatgaacaagtgttagaatgaacaaatgatgtaaat 461  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  2735762 aatacaaaacttagaagaaaaatagatatgaacaagtgttagaatgaacaaatgatgtaaat 2735701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 2736093 - 2735960
Alignment:
Q  40 gaaaatagacggggattttatcatgtagcaatgatatttgaacaactattttg--ataaaaacaatgagaaagaataagaagataatgtaaatatgtgaa 137  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||  | ||||| ||||| | |||||||||||||||||||||||| ||      
T  2736093 gaaaatagaaggggtttttatcatgtagcaatgatatttgaacaactattttggtacaaaaataatgaaagagaataagaagataatgtaaatatttgtg 2735994  T
Q  138 agaaagttgtacaaaaatagctgtacaaatatca 171  Q
    ||||| |||| | |||||||| ||| ||||||||    
T  2735993 agaaaattgtgctaaaatagccgtataaatatca 2735960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 416
Target Start/End: Complemental strand, 31908884 - 31908795
Alignment:
Q  324 taacattatcaattaatgatgatctgtgttgatatttgattctgcagaatgtcaaaacaaatattatagttaaagaaatacaaaacttagaag 416  Q
    |||||||||||||||||| ||||| || |||||||||||||||| |||||| ||||||||| ||||||||||   |||||||||| |||||||    
T  31908884 taacattatcaattaatggtgatcagtattgatatttgattctgtagaatgccaaaacaaagattatagtta---aaatacaaaatttagaag 31908795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 2735894 - 2735847
Alignment:
Q  239 ttggatgtatatttactctttcacaatgtgtcagatagactcattgga 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2735894 ttggatgtatatttactctttcacaatgtgtcagatagactcattgga 2735847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 7080624 - 7080547
Alignment:
Q  95 aaaaacaatg-agaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||| ||| |||||||||||||||||| | |||| || ||||||||||||||||||   |||||||||||||    
T  7080624 aaaaacaatggagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatca 7080547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 8442236 - 8442176
Alignment:
Q  111 aataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    ||||| |||||||||| |||||| || |||||||||||||||||||  |||||||||||||    
T  8442236 aataaaaagataatgtgaatatgagagagaaagttgtacaaaaataattgtacaaatatca 8442176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 43153054 - 43153114
Alignment:
Q  111 aataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    ||||| |||||||||| |||||| || |||||||||||||||||| | |||||||||||||    
T  43153054 aataaaaagataatgtgaatatgagagagaaagttgtacaaaaattgttgtacaaatatca 43153114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 12203231 - 12203164
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| |  ||| || |||||||||||||||||| | |||||||||||||    
T  12203231 gagagagaataagaagataatgtgagcatgagagagaaagttgtacaaaaatggttgtacaaatatca 12203164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 35595973 - 35596038
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatat 169  Q
    |||| |||||||||||| ||| | ||||||  |||||||||||||||||||| | |||||||||||    
T  35595973 gagagagaataagaagaaaatatgaatatgataaagaaagttgtacaaaaatggttgtacaaatat 35596038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 9957199 - 9957255
Alignment:
Q  115 agaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||||| | |||| ||||||||||| ||||||||||  |||||||||||||    
T  9957199 agaagataatgtgagtatgagaaagaaagttctacaaaaataattgtacaaatatca 9957255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 20985516 - 20985567
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    |||| |||||||||||||||||| | |||| || ||||||||||||||||||    
T  20985516 gagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaat 20985567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 38919929 - 38919869
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||| ||||||| | |||| ||  ||||||||||||||||||| |||||||||||||    
T  38919929 agaataagaaaataatgtgagtatgaga--gaaagttgtacaaaaatagttgtacaaatatca 38919869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 12891083 - 12891132
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaa 153  Q
    |||| |||||||||||||||||| |||||| || |||| |||||||||||    
T  12891083 gagagagaataagaagataatgtgaatatgagagagaatgttgtacaaaa 12891132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 22653732 - 22653688
Alignment:
Q  111 aataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    |||||||||||||||| | |||| || ||||||||||||||||||    
T  22653732 aataagaagataatgtgagtatgagagagaaagttgtacaaaaat 22653688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 43149321 - 43149394
Alignment:
Q  95 aaaaacaatgagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaata 168  Q
    ||||| |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||||||||    
T  43149321 aaaaagaatgagaaagaataagaagataatgtgagtatgagaaagaaagttgtacaaaaatagttgtacaaata 43149394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 35368695 - 35368628
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| || |||||||||||||||||||| |||||||||||||    
T  35368695 gagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatagttgtacaaatatca 35368628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 29057732 - 29057665
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| || |||||||||||||||||| | |||||||||||||    
T  29057732 gagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatca 29057665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 50745633 - 50745566
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| || ||||||||||||||||||   |||||||||||||    
T  50745633 gagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatca 50745566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 29846883 - 29846945
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||| ||||||| | |||| || |||||||||||||||||| | |||||||||||||    
T  29846883 agaataagaatataatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatca 29846945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 48490500 - 48490567
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| ||||||| |||||||||| | |||| || |||||||||||||||| | | |||||||||||||    
T  48490500 gagagagaataaaaagataatgtgagtatgagagagaaagttgtacaaaagtggttgtacaaatatca 48490567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 11404947 - 11404997
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaa 154  Q
    |||| ||||||||| |||||||||| |||| || |||||||||||||||||    
T  11404947 gagagagaataagaggataatgtaagtatgagagagaaagttgtacaaaaa 11404997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 32687947 - 32687985
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaa 142  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  32687947 gagagagaataagaagataatgtaaatatgagaaagaaa 32687985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 43220133 - 43220195
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||||||||||| | |||| || |||||||| ||||||||| | |||| ||||||||    
T  43220133 agaataagaagataatgtgagtatgagagagaaagttttacaaaaatggttgtaaaaatatca 43220195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 49361827 - 49361889
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||||||||||| | |||| || | ||||||||||||||||   |||||||||||||    
T  49361827 agaataagaagataatgtgagtatgagagaaaaagttgtacaaaaatgattgtacaaatatca 49361889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 27276827 - 27276770
Alignment:
Q  95 aaaaacaatgagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaa 152  Q
    ||||| || |||| |||||||||||||||||| |||||| || | |||||||||||||    
T  27276827 aaaaagaaagagagagaataagaagataatgtgaatatgagagataaagttgtacaaa 27276770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 45517644 - 45517693
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaa 153  Q
    |||| |||||||||||||||||| ||||||  |||||||||| |||||||    
T  45517644 gagagagaataagaagataatgtgaatatgaaaaagaaagttatacaaaa 45517693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 20549363 - 20549423
Alignment:
Q  95 aaaaacaatgagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    ||||| || |||| |||||||||||||||||| |||||| || |||| ||| |||||||||    
T  20549363 aaaaagaaagagagagaataagaagataatgtgaatatgagagagaatgttatacaaaaat 20549423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 7795098 - 7795031
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||||||||| | |||||||||||||    
T  7795098 gagagagaataagaagataatgtaagtatgagaaagaaagttgtacaaaaatggttgtacaaatatca 7795031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 31413773 - 31413840
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||| |||||||||||| | |||| || |||||||||||||||||||| |||||||||||||    
T  31413773 gagaaagaattagaagataatgtcagtatgagagagaaagttgtacaaaaatagttgtacaaatatca 31413840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 36871160 - 36871222
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||||||||||  |||||  || |||||||||||||||||||| |||||||||||||    
T  36871160 agaataagaagataatgcgaatataagagagaaagttgtacaaaaatagttgtacaaatatca 36871222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 1868887 - 1868947
Alignment:
Q  111 aataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||||||||| | |||| || |||||||||||||||||| | |||||||||||||    
T  1868887 aataagaagataatgtgagtatgagatagaaagttgtacaaaaatggttgtacaaatatca 1868947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 6686130 - 6686079
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    ||||||||||||||||||||||||| |||| || |||| |||||||||||||    
T  6686130 gagaaagaataagaagataatgtaagtatgagagagaatgttgtacaaaaat 6686079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 29577423 - 29577474
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    |||| |||||||||||||||||| | |||| |||||||||||||||||||||    
T  29577423 gagagagaataagaagataatgtgagtatgagaaagaaagttgtacaaaaat 29577474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 54848217 - 54848155
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||| ||||||| |||||| || |||| ||||||||||||| | |||||||||||||    
T  54848217 agaataagaaaataatgtgaatatgagagagaaggttgtacaaaaatggttgtacaaatatca 54848155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 9096021 - 9095957
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaata 168  Q
    |||| |||||||||||||||||| | |||| || ||||| |||||||||||||  ||||||||||    
T  9096021 gagagagaataagaagataatgtgagtatgagagagaaaattgtacaaaaataattgtacaaata 9095957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 24310515 - 24310575
Alignment:
Q  111 aataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||| ||||| | |||| || |||||||||||||||||| | |||||||||||||    
T  24310515 aataagaagaaaatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatca 24310575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 46791985 - 46792045
Alignment:
Q  111 aataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||||||||| | |||| |||||||| |||||||||||| | || ||||||||||    
T  46791985 aataagaagataatgtgagtatgagaaagaaaattgtacaaaaattgttgcacaaatatca 46792045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 51107435 - 51107479
Alignment:
Q  111 aataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    ||||||||||||||||||||||| || |||||||||| |||||||    
T  51107435 aataagaagataatgtaaatatgagagagaaagttgtgcaaaaat 51107479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 4577641 - 4577590
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    |||| |||||||||||||||||| | |||| || ||||||||||||||||||    
T  4577641 gagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaat 4577590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 36110218 - 36110167
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    |||| |||||||||||||||||| |||||| || |||| |||||||||||||    
T  36110218 gagagagaataagaagataatgtgaatatgagagagaaggttgtacaaaaat 36110167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 46799840 - 46799779
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaa 165  Q
    |||| |||||||||||||||||| | |||| || |||| ||||||||||||| | |||||||    
T  46799840 gagagagaataagaagataatgtgagtatgagagagaaggttgtacaaaaatggttgtacaa 46799779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 21766640 - 21766564
Alignment:
Q  95 aaaaacaatgagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    ||||| || |||| |||||||||||||||||| | |||| || |||| |||||||||||||   | |||||||||||    
T  21766640 aaaaagaaagagagagaataagaagataatgtgagtatgagagagaaggttgtacaaaaatgattatacaaatatca 21766564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 27384269 - 27384193
Alignment:
Q  95 aaaaacaatgagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    ||||| || |||| |||||||||| ||||| | |||||| || |||||||||||  ||||| | |||||||||||||    
T  27384269 aaaaagaaagagagagaataagaatataatatgaatatgagagagaaagttgtaataaaatggttgtacaaatatca 27384193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 50460699 - 50460766
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| ||||||||||||||||||||| | |||||||||||||    
T  50460699 gagagagaataagaagataatgtgagtatgagaaagaaagttgtacaaaaatggttgtacaaatatca 50460766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 35030749 - 35030813
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaata 168  Q
    |||| |||||||||||||||||||| |||| || |||||||||||||||||| | ||||||||||    
T  35030749 gagagagaataagaagataatgtaagtatgagagagaaagttgtacaaaaatggttgtacaaata 35030813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 11121565 - 11121498
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| || |||||||||||||||| | | |||||||||||||    
T  11121565 gagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaagttgttgtacaaatatca 11121498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 16252746 - 16252813
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    ||||||||||| ||||||||||| | ||||  | |||||||||||||||||| | |||||||||||||    
T  16252746 gagaaagaataggaagataatgtgagtatgaaagagaaagttgtacaaaaatggttgtacaaatatca 16252813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 8577489 - 8577538
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaa 153  Q
    |||| ||||||||||||||||||||||||| || |||| |||||||||||    
T  8577489 gagagagaataagaagataatgtaaatatgagagagaaggttgtacaaaa 8577538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 30414941 - 30414881
Alignment:
Q  111 aataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||||||||| | |||| || |||| ||||||||||||| | |||||||||||||    
T  30414941 aataagaagataatgtgagtatgagagagaaggttgtacaaaaatggttgtacaaatatca 30414881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 48256991 - 48256943
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaa 152  Q
    |||| |||||||||||||||||| |||||| || |||||||||||||||    
T  48256991 gagagagaataagaagataatgtgaatatgagagagaaagttgtacaaa 48256943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 14002729 - 14002780
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    |||| ||| |||||| |||||||||||||| |||||||||||||| ||||||    
T  14002729 gagagagagtaagaatataatgtaaatatgagaaagaaagttgtataaaaat 14002780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 31244720 - 31244771
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    |||| |||||||||||||||||| |||||| || |||| |||||||||||||    
T  31244720 gagatagaataagaagataatgtgaatatgagagagaatgttgtacaaaaat 31244771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 3826807 - 3826869
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||||||||||| |||||| || | ||||||||  |||| ||| |||||||||||||    
T  3826807 agaataagaagataatgtgaatatgagagataaagttgttaaaaattagttgtacaaatatca 3826869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 4638018 - 4637942
Alignment:
Q  95 aaaaacaatgagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    ||||| || |||| ||||||||| ||||||||||||||  || ||||||||||   ||||| | |||||||||||||    
T  4638018 aaaaagaaagagagagaataagatgataatgtaaatataagagagaaagttgttacaaaatggttgtacaaatatca 4637942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 91
Target Start/End: Original strand, 36230194 - 36230222
Alignment:
Q  63 tgtagcaatgatatttgaacaactatttt 91  Q
    |||||||||||||||||||||||||||||    
T  36230194 tgtagcaatgatatttgaacaactatttt 36230222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 11828808 - 11828874
Alignment:
Q  105 agaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    ||||||||||||||||||| || |||||| || |||||||||||||||||| | |||||||||||||    
T  11828808 agaaagaataagaagataacgtgaatatgagagagaaagttgtacaaaaatggttgtacaaatatca 11828874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 45202119 - 45202186
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| |||||| || ||||||||||| |||||| | |||||||||||||    
T  45202119 gagagagaataagaagataatgtgaatatgagagagaaagttgtaaaaaaatggttgtacaaatatca 45202186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 40115599 - 40115532
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| || ||||| || ||||||||||| |||||||||||||    
T  40115599 gagagagaataagaagataatgttagtatgagagagaaaattatacaaaaatagttgtacaaatatca 40115532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 27538893 - 27538970
Alignment:
Q  95 aaaaacaatg-agaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||| ||| |||||||||||||||||| | |||   | |||||||||||||||||| | |||||||||||||    
T  27538893 aaaaacaatggagagagaataagaagataatgtgagtatcatagagaaagttgtacaaaaatggttgtacaaatatca 27538970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 6885458 - 6885534
Alignment:
Q  95 aaaaacaatgagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    ||||| || |||| |||||||||||||||||| | |||| || ||||| ||||| |||||||| |||||||| ||||    
T  6885458 aaaaagaaagagagagaataagaagataatgtgagtatgagagagaaaattgtataaaaatagttgtacaaaaatca 6885534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 22296116 - 22296183
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||  || ||||| |||||||||||| | |||||||||||||    
T  22296116 gagagagaataagaagataatgtgagtatcagagagaaaattgtacaaaaatggttgtacaaatatca 22296183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 38598336 - 38598403
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| || |||| ||||||||||||| | | |||||||||||    
T  38598336 gagagagaataagaagataatgtgagtatgagagagaaggttgtacaaaaatggttatacaaatatca 38598403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 8757637 - 8757564
Alignment:
Q  95 aaaaacaatgagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaata 168  Q
    ||||| || |||| |||||||||||||||||| | |||| || | ||||||||| |||||| | ||||||||||    
T  8757637 aaaaagaaagagagagaataagaagataatgtgagtatgagagataaagttgtataaaaatggttgtacaaata 8757564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 28264607 - 28264562
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaa 154  Q
    |||||||||||||||||| | |||| || |||||||||||||||||    
T  28264607 agaataagaagataatgtgagtatgagatagaaagttgtacaaaaa 28264562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 38027602 - 38027651
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaa 153  Q
    |||| |||||||||||||||||| |||||| || |||| |||||||||||    
T  38027602 gagagagaataagaagataatgtgaatatgagagagaaggttgtacaaaa 38027651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 38777970 - 38777909
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatc 170  Q
    |||||||||||||||||| |||||| || ||||| ||||| ||||||   ||||||||||||    
T  38777970 agaataagaagataatgtgaatatgagagagaaaattgtataaaaatgattgtacaaatatc 38777909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 19523388 - 19523436
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaa 152  Q
    |||| |||||||||||||||||| | |||| || |||||||||||||||    
T  19523388 gagagagaataagaagataatgtgagtatgagagagaaagttgtacaaa 19523436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 7304115 - 7304163
Alignment:
Q  107 aaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  7304115 aaagaataagaagataatgtaaatatgagagagaaagttgtacaaaaat 7304163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 9395324 - 9395391
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | ||||  | |||||||||||||||||||| |||||||||||||    
T  9395324 gagagagaataagaagataatgtgagtatgaaagagaaagttgtacaaaaatagttgtacaaatatca 9395391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 16121236 - 16121169
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||||| ||||  | |||||||||||||||||| | |||||||||||||    
T  16121236 gagagagaataagaagataatgtaagtatgaaagagaaagttgtacaaaaatggttgtacaaatatca 16121169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 2165287 - 2165354
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||  | |||| || | |||||||||||||||| | |||||||||||||    
T  2165287 gagagagaataagaagataatgcgagtatgagagataaagttgtacaaaaatggttgtacaaatatca 2165354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 2176920 - 2176987
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||  | |||| || | |||||||||||||||| | |||||||||||||    
T  2176920 gagagagaataagaagataatgcgagtatgagagataaagttgtacaaaaatggttgtacaaatatca 2176987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 17442899 - 17442841
Alignment:
Q  111 aataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatat 169  Q
    |||||||||||||||| | |||  || |||||||||||||||||| | |||||||||||    
T  17442899 aataagaagataatgtgagtataagagagaaagttgtacaaaaatggttgtacaaatat 17442841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 32135423 - 32135485
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||||||||||| | ||||  | ||||||||||||||||||   |||||||||||||    
T  32135423 agaataagaagataatgtgagtatgatagagaaagttgtacaaaaatgattgtacaaatatca 32135485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 8778861 - 8778902
Alignment:
Q  106 gaaagaataagaagataatgtaaatatgtgaaagaaagttgt 147  Q
    ||||||||||||||||||||| | ||||||| ||||||||||    
T  8778861 gaaagaataagaagataatgtgagtatgtgagagaaagttgt 8778902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 22422234 - 22422185
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaa 153  Q
    |||| |||||||||||||||||| | |||| || ||||||||||||||||    
T  22422234 gagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaa 22422185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 25567484 - 25567544
Alignment:
Q  111 aataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||||||||| | |||| || | |||||||||||||||| | ||||| |||||||    
T  25567484 aataagaagataatgtgagtatgagagataaagttgtacaaaaatggttgtacgaatatca 25567544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 5057 - 5108
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    ||||||||||||||||||||| |||||||| || ||||||||||||||||||    
T  5057 gagaaagaataagaagataatataaatatgagagagaaagttgtacaaaaat 5108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 24380708 - 24380775
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| |||||||||||||| |||||| | |||||||||||||    
T  24380708 gagagagaataagaagataatgtgagtatgagaaagaaagttgtataaaaatggttgtacaaatatca 24380775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 25272675 - 25272608
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | ||| ||| |||||||||||||||||| | |||||||||||||    
T  25272675 gagagagaataagaagataatgtgagtatatgagagaaagttgtacaaaaatggttgtacaaatatca 25272608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 27866524 - 27866591
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| || | |||||||||||||||| | |||||||||||||    
T  27866524 gagagagaataagaagataatgtgagtatgagagataaagttgtacaaaaatggttgtacaaatatca 27866591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 33465031 - 33465093
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||||||||||| | |||| || ||||| |||||||||||| | |||||||||||||    
T  33465031 agaataagaagataatgtgagtatgagagagaaaattgtacaaaaatggttgtacaaatatca 33465093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 17039241 - 17039190
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    |||| |||||||||||||||||| | |||| || ||||||||||||||||||    
T  17039241 gagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaat 17039190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 37848607 - 37848674
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||| | | |||| || ||||||||||||||||||   |||||||||||||    
T  37848607 gagagagaataagaagataatattagtatgagagagaaagttgtacaaaaatgattgtacaaatatca 37848674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 38547277 - 38547344
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| ||| |||||| ||||||| | |||| |||||||||||||  |||||||| |||||||||||||    
T  38547277 gagagagagtaagaatataatgtgagtatgagaaagaaagttgtcaaaaaatagttgtacaaatatca 38547344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 40108208 - 40108141
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| || ||||||||||| |||||| | |||||||| ||||    
T  40108208 gagagagaataagaagataatgtgagtatgagagagaaagttgtataaaaatggttgtacaaacatca 40108141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 49142504 - 49142571
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| || ||||| || ||||||||| | |||||||||||||    
T  49142504 gagagagaataagaagataatgtgagtatgagagagaaaattttacaaaaatggttgtacaaatatca 49142571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 14233622 - 14233698
Alignment:
Q  95 aaaaacaatgagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    ||||| || |||| |||||||||||||||||  | |||| || ||||||||||| |||||||| |||||||||||||    
T  14233622 aaaaagaaagagagagaataagaagataatgcgagtatgagagagaaagttgtaaaaaaatagttgtacaaatatca 14233698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 6243118 - 6243051
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| || ||||||||||||||||||   |||||||||||||    
T  6243118 gagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatca 6243051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 13924095 - 13924028
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| |  ||| || |||||||||||||||||| | |||||||||||||    
T  13924095 gagagagaataagaagataatgtgagcatgagagagaaagttgtacaaaaatggttgtacaaatatca 13924028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 25430730 - 25430663
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | |||| || |||| ||||||||||||| | |||||||||||||    
T  25430730 gagagagaataagaagataatgtgagtatgagatagaaggttgtacaaaaatggttgtacaaatatca 25430663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 41776254 - 41776192
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    ||||| ||||||| |||| | |||| || |||||||||||||||||||| |||||||||||||    
T  41776254 agaatgagaagatgatgtgagtatgagagagaaagttgtacaaaaatagttgtacaaatatca 41776192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 27300430 - 27300381
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaa 153  Q
    |||| |||||||||||||||||| |||||| || ||||||||||||||||    
T  27300430 gagagagaataagaagataatgtgaatatgagagagaaagttgtacaaaa 27300381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 38939179 - 38939243
Alignment:
Q  107 aaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    ||||||||| || ||||||| | |||| || |||||||||||||||||||| |||| ||||||||    
T  38939179 aaagaataaaaacataatgtgagtatgagagagaaagttgtacaaaaatagttgtagaaatatca 38939243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 20995045 - 20995096
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    |||| |||||||||||||||||||| |||| || |||| |||||||||||||    
T  20995045 gagagagaataagaagataatgtaagtatgagagagaaggttgtacaaaaat 20995096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 30462700 - 30462771
Alignment:
Q  96 aaaacaatg-agaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaa 166  Q
    ||||||||| |||||||||||||||||||||| |||||| || | |||| |||| |||||| | ||||||||    
T  30462700 aaaacaatggagaaagaataagaagataatgtgaatatgagagaaaaagctgtaaaaaaattgttgtacaaa 30462771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 37471727 - 37471660
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||| | || | || ||||||||||||||||||   |||||||||||||    
T  37471727 gagagagaataagaagataatgtgagtacgagagagaaagttgtacaaaaatgattgtacaaatatca 37471660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 23265346 - 23265408
Alignment:
Q  109 agaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||||||||||||||||| | |||| || | ||||||||| |||||||| | |||||||||||    
T  23265346 agaataagaagataatgtgagtatgagagaaaaagttgtataaaaatagttatacaaatatca 23265408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 22836126 - 22836175
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaa 153  Q
    |||| |||||||||||||||||| | |||| || ||||||||||||||||    
T  22836126 gagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaa 22836175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 17122 - 17055
Alignment:
Q  104 gagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaatagctgtacaaatatca 171  Q
    |||| |||||||||||||||||  | |||| || | |||||||||||||||| | |||||||||||||    
T  17122 gagagagaataagaagataatgcgagtatgagagataaagttgtacaaaaatggttgtacaaatatca 17055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 48747 - 48687
Alignment:
Q  95 aaaaacaatgagaaagaataagaagataatgtaaatatgtgaaagaaagttgtacaaaaat 155  Q
    ||||| || |||| |||||||||||||||||| | |||| || |||| |||||||||||||    
T  48747 aaaaagaaagagagagaataagaagataatgtgagtatgagagagaaggttgtacaaaaat 48687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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