View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18019_low_5 (Length: 443)
Name: NF18019_low_5
Description: NF18019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18019_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 28245251 - 28245425
Alignment:
| Q |
51 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
150 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245251 |
ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt |
28245350 |
T |
|
| Q |
151 |
ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28245351 |
ctgtttggcatttgtgatttataatttctttgaaattcatatgtttgatgttgccaaagaataagaaattatcct |
28245425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 45349822 - 45349996
Alignment:
| Q |
51 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
150 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45349822 |
ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt |
45349921 |
T |
|
| Q |
151 |
ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
45349922 |
ctgtttggcatttgtgatttataatttcttttaaattcatgtgtttgatgttgccaaagaataacaaattatcct |
45349996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 11947316 - 11947490
Alignment:
| Q |
51 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
150 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
11947316 |
ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt |
11947415 |
T |
|
| Q |
151 |
ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11947416 |
ctgtttggcatttgtgatttataatttctttgaaattcatgtgttagatgttgccaaagaataagaaattatcct |
11947490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 17716176 - 17716350
Alignment:
| Q |
51 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
150 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17716176 |
ctgttatgaatcatctatttcgttcacattgtttgatttttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt |
17716275 |
T |
|
| Q |
151 |
ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17716276 |
ctgtttggcatttgtgatttataatttctttgaaattcatgtgtttgatgttgccaaagaataagaaattatcct |
17716350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 14667230 - 14667404
Alignment:
| Q |
51 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
150 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
14667230 |
ctgttatgaatcatctatttcgttcacattgtttgatttttgttttgaaattctacgtgtttaattttcgtttcacaatttaactcaaattcttcttatt |
14667329 |
T |
|
| Q |
151 |
ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
14667330 |
ctgtttggcatttgtgatttataatttctttgaaattcatgtctttgatgttgccaaagaataacaaattatcct |
14667404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 51 - 225
Target Start/End: Complemental strand, 1658263 - 1658089
Alignment:
| Q |
51 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
150 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1658263 |
ctgttatgagtcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt |
1658164 |
T |
|
| Q |
151 |
ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1658163 |
ctgtttggcatttgtgatttataatttctttgaaattcatgtgtttgatgttgccaaagaataagaaattatcct |
1658089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 293 - 425
Target Start/End: Original strand, 27832624 - 27832756
Alignment:
| Q |
293 |
gaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaattgaatttcttaaggtccgcatgtctgctct |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27832624 |
gaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaattgaatttcttaaggtccgcatgtctgctct |
27832723 |
T |
|
| Q |
393 |
ctttgatctttgacttgatttgagggcctggta |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27832724 |
ctttgatctttgacttgatttgagggcctggta |
27832756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 288 - 425
Target Start/End: Original strand, 27827691 - 27827824
Alignment:
| Q |
288 |
taaacgaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaattgaatttcttaaggtccgcatgtct |
387 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| || |||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
27827691 |
taaacaaattcgtgcacaataagccgatggtctggaattaag-aatgaaggaatcattgctgtgtgcacgaaaattaaatttt---aggtccgcatgtct |
27827786 |
T |
|
| Q |
388 |
gctctctttgatctttgacttgatttgagggcctggta |
425 |
Q |
| |
|
|| |||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
27827787 |
gccctctatgatctttgatttgattttagggcctggta |
27827824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 27845227 - 27845306
Alignment:
| Q |
282 |
gaattataaacgaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaat |
362 |
Q |
| |
|
|||||||||| |||| |||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27845227 |
gaattataaatgaatatgtgcacaataagtcgatgctctgaat-aaaacaatgaaggaagcattgttgtgtgcacgaaaat |
27845306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 13851758 - 13851722
Alignment:
| Q |
51 |
ctgttatgaatcatctatttcattcacattgtttgaa |
87 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
13851758 |
ctgttatgaatcatctatttcgttcacattgtctgaa |
13851722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 23758815 - 23758989
Alignment:
| Q |
51 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
150 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23758815 |
ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgatattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt |
23758914 |
T |
|
| Q |
151 |
ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct |
225 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23758915 |
ctgttcggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaataagaaattgtcct |
23758989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 23824275 - 23824449
Alignment:
| Q |
51 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
150 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23824275 |
ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgatattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt |
23824374 |
T |
|
| Q |
151 |
ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct |
225 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23824375 |
ctgttcggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaataagaaattgtcct |
23824449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 24046651 - 24046483
Alignment:
| Q |
53 |
gttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgttct |
152 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24046651 |
gttatgaatcatctatttcgttcacattgtttgatttttgttttgaaatgttatgtgtttaattttcgtttcacaatttaactcaaattcttcttgttct |
24046552 |
T |
|
| Q |
153 |
gtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaatta |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24046551 |
gtttggcatttgtgatttataatttctttgaaattcatgtgtttgatgttgccaaagaataagaaatta |
24046483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 23758226 - 23758400
Alignment:
| Q |
51 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
150 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23758226 |
ctgttatgaatcatctatttcgttcacattgtttaattttttttttgaaattctatgtgtttaatttttgtttcacaatttaactcaaattcttcttgtt |
23758325 |
T |
|
| Q |
151 |
ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct |
225 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23758326 |
ctgtttggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaataagaaattgtcct |
23758400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 23823682 - 23823857
Alignment:
| Q |
51 |
ctgttatgaatcatctatttcattcacattgtttgaattttgtttt-gaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgt |
149 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||| |||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23823682 |
ctgttatgaatcatctatttcgttcacattgtttaatttttttttttgaaattctatgtgtttaatttttgtttcacaatttaactcaaattcttcttgt |
23823781 |
T |
|
| Q |
150 |
tctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23823782 |
tctgtttggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaataagaaattgtcct |
23823857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 9238599 - 9238704
Alignment:
| Q |
51 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
150 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9238599 |
ctgttatgaatcatct-tttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt |
9238697 |
T |
|
| Q |
151 |
ctgtttg |
157 |
Q |
| |
|
||||||| |
|
|
| T |
9238698 |
ctgtttg |
9238704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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