View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18019_low_6 (Length: 361)
Name: NF18019_low_6
Description: NF18019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18019_low_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 6 - 361
Target Start/End: Complemental strand, 32992791 - 32992450
Alignment:
| Q |
6 |
gtcgaagaaaatccaactcaagttgatttagattaattagttttattatatgccaatgcccccaatagtgaccttgcttcattgatgagtggtccccact |
105 |
Q |
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| T |
32992791 |
gtcgaagaaaatccaactcaagttgatttagattaattagttttat---atgccaatgcccccaatagtgacctggcttcattggtgagtggtccccact |
32992695 |
T |
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| Q |
106 |
acacaaatgtacaattttagacccaaaacaaaaattgagaattgagctttcaagtccaaatctgtcctgctataggtcatggagctttcaaggtgtccaa |
205 |
Q |
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| T |
32992694 |
acacaaatgtacaattttagacccaaaacaaaaattgagaattgagctttcaagtccaaatctgtcctgctataggtcatggagctttcaaggtgtccaa |
32992595 |
T |
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| Q |
206 |
gtaaaacaatgttttaaaactagaattgattcgattagatttttgagtcatggttcagttgattcaatcattttaactaagtttgaactagataacaaat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
32992594 |
gtaaaacaatgttttaaaactagaattgattcgattagatttttgagtcatagttcagttggttcaatcattttaactaagtttgaa------aacaaat |
32992501 |
T |
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| Q |
306 |
attttcttcatcttatattgtatatcttatttgtaatatttgtttgtttcatatta |
361 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
32992500 |
attttcttcatctta-----tatatcttatttgtaatatttgtttgtctcatatta |
32992450 |
T |
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