View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18020_high_1 (Length: 815)

Name: NF18020_high_1
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18020_high_1
NF18020_high_1
[»] chr8 (8 HSPs)
chr8 (140-801)||(5252240-5252901)
chr8 (19-132)||(5252927-5253040)
chr8 (353-472)||(1010762-1010881)
chr8 (353-418)||(25108960-25109025)
chr8 (366-449)||(39920681-39920764)
chr8 (358-472)||(29978016-29978130)
chr8 (350-451)||(3774822-3774923)
chr8 (363-412)||(24425549-24425598)
[»] chr5 (7 HSPs)
chr5 (146-329)||(28455872-28456056)
chr5 (381-433)||(4634813-4634865)
chr5 (353-412)||(21823892-21823951)
chr5 (358-417)||(27529695-27529754)
chr5 (358-412)||(43463677-43463731)
chr5 (381-418)||(20427506-20427543)
chr5 (171-260)||(35122147-35122236)
[»] chr3 (9 HSPs)
chr3 (358-510)||(29807377-29807529)
chr3 (362-443)||(25049760-25049841)
chr3 (171-284)||(29807574-29807687)
chr3 (200-316)||(25050415-25050531)
chr3 (353-443)||(30827831-30827921)
chr3 (358-417)||(53504506-53504565)
chr3 (366-429)||(15205001-15205064)
chr3 (354-463)||(21735013-21735122)
chr3 (194-271)||(28624371-28624448)
[»] chr7 (10 HSPs)
chr7 (170-467)||(22079171-22079470)
chr7 (353-473)||(38430346-38430466)
chr7 (358-412)||(12463672-12463726)
chr7 (358-429)||(7288149-7288220)
chr7 (358-424)||(20367904-20367970)
chr7 (360-417)||(8751130-8751187)
chr7 (358-458)||(9601550-9601650)
chr7 (358-458)||(9829121-9829221)
chr7 (197-236)||(4959826-4959865)
chr7 (365-430)||(3942860-3942925)
[»] chr4 (8 HSPs)
chr4 (197-332)||(16698812-16698947)
chr4 (358-429)||(22196285-22196356)
chr4 (358-473)||(51071939-51072054)
chr4 (358-501)||(16698637-16698780)
chr4 (357-402)||(10358396-10358441)
chr4 (363-412)||(18871038-18871087)
chr4 (358-418)||(46610680-46610740)
chr4 (358-412)||(5320261-5320315)
[»] chr1 (6 HSPs)
chr1 (353-472)||(15174509-15174628)
chr1 (358-430)||(50817224-50817296)
chr1 (358-408)||(43914155-43914205)
chr1 (360-409)||(41806017-41806066)
chr1 (358-417)||(14975970-14976029)
chr1 (363-433)||(751626-751696)
[»] scaffold0309 (1 HSPs)
scaffold0309 (363-473)||(507-617)
[»] chr2 (7 HSPs)
chr2 (358-417)||(33036329-33036388)
chr2 (358-429)||(5664009-5664080)
chr2 (358-417)||(26245830-26245889)
chr2 (358-417)||(45717955-45718014)
chr2 (363-429)||(45469530-45469596)
chr2 (363-429)||(45702555-45702621)
chr2 (222-271)||(2467640-2467689)
[»] chr6 (10 HSPs)
chr6 (353-418)||(15171446-15171511)
chr6 (353-418)||(15180218-15180283)
chr6 (192-325)||(10747858-10747990)
chr6 (353-418)||(15471902-15471967)
chr6 (358-417)||(12334903-12334962)
chr6 (353-412)||(16478959-16479018)
chr6 (363-417)||(21606393-21606447)
chr6 (380-429)||(3298056-3298105)
chr6 (360-449)||(18488346-18488435)
chr6 (197-238)||(34702338-34702379)
[»] scaffold0155 (1 HSPs)
scaffold0155 (350-429)||(32960-33039)
[»] scaffold0533 (1 HSPs)
scaffold0533 (353-418)||(739-804)


Alignment Details
Target: chr8 (Bit Score: 541; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 140 - 801
Target Start/End: Complemental strand, 5252901 - 5252240
Alignment:
Q  140 gtttctcataatgagccttcaacacattatacacaatccgtctttataaactaacatcctccaacaccatttatttagtaatgacaagttaaactccctc 239  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  5252901 gtttctcataatgagccttcaacacattatacacaacccgtctttataaactaacatcctccaataccatttatctaataatgacaagttaaactccctc 5252802  T
Q  240 aaccttctaacacctaacccttcatcctccttactctgacaaacagaatcttaattcacccaagatattttgctaaaattctcacatccccccnnnnnnn 339  Q
    ||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||           
T  5252801 aaccttctaacacctaaccattcatcctccttactccgacatacagaatcttaattcacccaagatattttgctaaaattctcacatccccccaaaaaaa 5252702  T
Q  340 tattttaagttttgatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcgg 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  5252701 tattttaagttttgatataagagattatacctgtgggggctttgaagaaggaaagaaagtaaatcgaaagagaatacatgacaaacttcaaaaggatcgg 5252602  T
Q  440 acgatcaccaaatgaaagatacttgcttttccaacttaacaacctcaaattaatgcgatcaaagagagggttccagaagcctaaacaatgacaatccccg 539  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5252601 acgatcaccaaatgaaatatacttgcttttccaactagacaacctcaaattaatgcgatcaaggagagggttccagaagcctaaacaatgacaatccccg 5252502  T
Q  540 ccaattgaaatacccgaatacataaaggaaatactacaagtcttgcaatatgtataaaggttaagaagtaggttatctttattcataataatttttatga 639  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  5252501 ccaattgaaatacccgaatacataaaggaaatactataagtcttgcaatatggataaaggttaagaagtaggttatctttattcataatattttttatga 5252402  T
Q  640 tgtaaccnnnnnnnntatggacgcatcctttgatgagggttcaaagcaccacaagtatttgttgttgtattatcaaatatatgataatagcaatttgata 739  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5252401 tgtaaccaaaaaaaatatggacgcatcctttgatgagggttcaaagcaccacaagtatttgttgttgtattatcaaatatatgataatagcaatttgata 5252302  T
Q  740 cagtaatataatgttagaaatattttaattattttgacacaataataatctactagaataat 801  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5252301 cagtaatatactgttagaaatattttaattattttgacacaataataatctactagaataat 5252240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 5253040 - 5252927
Alignment:
Q  19 caattaactcaattattgagttagcggtatttatcacaaagtgaatttaactttggggtcaaattatttattacagtagttattagtcacattccaccaa 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  5253040 caattaacttaattattgagttagcggtatttatcacaaagtgaatttaactttggggtcaaattttttattacagtagttattagttacattccaccaa 5252941  T
Q  119 gctgaacctagcct 132  Q
    ||||||||||||||    
T  5252940 gctgaacctagcct 5252927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 353 - 472
Target Start/End: Original strand, 1010762 - 1010881
Alignment:
Q  353 gatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcaccaaat 452  Q
    |||| |||| ||||||  || |||||| ||||||||| |||||||||||| ||||||||| ||||| ||| | |||||||||||| | ||| |||||||     
T  1010762 gatagaagaaattatatttgcgggggccttgaagaaggaaagaaagtaaaccggaagagatgacatgacagatttcaaaaggatcaggcgaccaccaaac 1010861  T
Q  453 gaaagatacttgcttttcca 472  Q
    |||||| | || ||||||||    
T  1010862 gaaagaaatttacttttcca 1010881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 25109025 - 25108960
Alignment:
Q  353 gatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacat 418  Q
    |||| |||| ||||||||||  ||||||||||| ||| |||||||||||| ||||||||| |||||    
T  25109025 gatagaagaaattatacctgcaggggctttgaaaaaggaaagaaagtaaaccggaagagaggacat 25108960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 39920681 - 39920764
Alignment:
Q  366 atacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcacca 449  Q
    |||||||| || || ||||||||| |||||||||||| ||||||||| || |  ||| |||||| ||||||| ||||| |||||    
T  39920681 atacctgtaggtgccttgaagaaggaaagaaagtaaaccggaagagatgataggacagacttcagaaggatcagacgaccacca 39920764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 472
Target Start/End: Original strand, 29978016 - 29978130
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcaccaaatgaaag 457  Q
    |||| ||||||| |||||| |  ||||||||||||||||||||||||  |||||| || || ||| | ||||  || ||| || || |||||| ||||||    
T  29978016 aagaaattatacatgtgggtgtcttgaagaagaaaagaaagtaaatcataagagatgatatgacatatttcaggagaatcagatgaccaccaattgaaag 29978115  T
Q  458 atacttgcttttcca 472  Q
    | | |||||||||||    
T  29978116 aaatttgcttttcca 29978130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 451
Target Start/End: Original strand, 3774822 - 3774923
Alignment:
Q  350 tttgatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcacca 449  Q
    ||||||| |||| |||||||||| ||| || ||||| ||| ||||||||||||  ||||| || ||||  ||||| ||||| || ||| ||||| |||||    
T  3774822 tttgatagaagaaattatacctgcgggagccttgaaaaaggaaagaaagtaaactggaagcgaggacaggacaaatttcaatagtatcagacgaccacca 3774921  T
Q  450 aa 451  Q
    ||    
T  3774922 aa 3774923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 412
Target Start/End: Original strand, 24425549 - 24425598
Alignment:
Q  363 attatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagaga 412  Q
    |||||||||| ||| || ||||||||| |||||||||||| |||||||||    
T  24425549 attatacctgcgggagccttgaagaaggaaagaaagtaaaccggaagaga 24425598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 3e-35; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 146 - 329
Target Start/End: Original strand, 28455872 - 28456056
Alignment:
Q  146 cataatgagccttcaacacattata-cacaatccgtctttataaactaacatcctccaacaccatttatttagtaatgacaagttaaactccctcaacct 244  Q
    |||| |||| |||||||||  |||| ||||| || ||||||| ||| |||||||||||||||||||||  |||||| |||||||| |||||||||| |||    
T  28455872 catagtgagtcttcaacaccctatatcacaacccatctttatcaaccaacatcctccaacaccatttacctagtaacgacaagttgaactccctcagcct 28455971  T
Q  245 tctaacacctaacccttcatcctccttactctgacaaacagaatcttaattcacccaagatattttgctaaaattctcacatccc 329  Q
     || |||||| ||||||||||||| |||||  |||||||||| || || ||||||||||||||||| ||||||| ||||| ||||    
T  28455972 cctgacaccttacccttcatcctcattacttcgacaaacagagtcctagttcacccaagatattttcctaaaatcctcacctccc 28456056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 4634865 - 4634813
Alignment:
Q  381 ttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaag 433  Q
    ||||||||| |||||||||||||||||| ||| ||||| ||||| ||||||||    
T  4634865 ttgaagaaggaaagaaagtaaatcggaatagatgacatgacaaatttcaaaag 4634813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 21823951 - 21823892
Alignment:
Q  353 gatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagaga 412  Q
    |||| ||||||| |||||||| ||||| ||||||||| |||||||||||| ||| |||||    
T  21823951 gatagaagagatgatacctgtaggggccttgaagaaggaaagaaagtaaaccgggagaga 21823892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 27529695 - 27529754
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagaca 417  Q
    |||| ||||||| |||||| || ||||| | | |||||||||||||||||||||||||||    
T  27529695 aagaaattatacatgtgggagccttgaaaacggaaagaaagtaaatcggaagagaagaca 27529754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 412
Target Start/End: Complemental strand, 43463731 - 43463677
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagaga 412  Q
    |||| ||||||| ||| ||||||||||| |||||||||||||||| |||| ||||    
T  43463731 aagaaattatacatgtaggggctttgaaaaagaaaagaaagtaaaccggaggaga 43463677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 20427543 - 20427506
Alignment:
Q  381 ttgaagaagaaaagaaagtaaatcggaagagaagacat 418  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  20427543 ttgaagaaggaaagaaagtaaatcggaagagaggacat 20427506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 35122236 - 35122147
Alignment:
Q  171 cacaatccgtctttataaactaacatcctccaacaccatttatttagtaatgacaagttaaactccctcaaccttctaacacctaaccct 260  Q
    |||||||| ||| |||  |||||||||||||||||||||||   ||||||||  |  ||||||| ||||||||| ||||| || ||||||    
T  35122236 cacaatccttctctatccactaacatcctccaacaccatttccctagtaatgcaacattaaacttcctcaacctcctaacccccaaccct 35122147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 4e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 358 - 510
Target Start/End: Complemental strand, 29807529 - 29807377
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcaccaaatgaaag 457  Q
    |||| ||||||  ||||||||| ||||||||| |||||||||||| |  ||||||| |||| |||||||||| |||||||  |||  |||| ||||||||    
T  29807529 aagatattataattgtgggggccttgaagaaggaaagaaagtaaaccaaaagagaaaacatgacaaacttcagaaggatcatacgtccaccgaatgaaag 29807430  T
Q  458 atacttgcttttccaacttaacaacctcaaattaatgcgatcaaagagagggt 510  Q
    || ||||||||| |||||  ||||||||||||||||||| |||| ||||||||    
T  29807429 attcttgctttttcaactagacaacctcaaattaatgcgttcaaggagagggt 29807377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 362 - 443
Target Start/End: Complemental strand, 25049841 - 25049760
Alignment:
Q  362 gattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacga 443  Q
    ||||||||||||||| || ||||||||| |||||||||||| ||| ||||||||||| |||||||||| ||||||| |||||    
T  25049841 gattatacctgtgggcgccttgaagaaggaaagaaagtaaaccgggagagaagacatgacaaacttcagaaggatcagacga 25049760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 29807687 - 29807574
Alignment:
Q  171 cacaatccgtctttataaactaacatcctccaacaccatttatttagtaatgacaagttaaactccctcaaccttctaacacctaacccttcatcctcct 270  Q
    |||||||||||||||| |||  ||||||||||||||||||||  ||||||  ||||||| | ||||||||  ||  | |||||||||||| |||||||||    
T  29807687 cacaatccgtctttatcaaccgacatcctccaacaccatttacatagtaacaacaagttgagctccctcatactcgtgacacctaaccctccatcctcct 29807588  T
Q  271 tactctgacaaaca 284  Q
    ||||| ||||||||    
T  29807587 tactccgacaaaca 29807574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 25050531 - 25050415
Alignment:
Q  200 ccaacaccatttatttagtaatgacaagttaaactccctcaaccttctaacacctaacccttcatcctccttactctgacaaacagaatcttaattcacc 299  Q
    |||||||||||||  |||||| |||| ||||||||||| |||||| || ||||||||||||  ||| ||||||||||| ||||| |||||  | || |||    
T  25050531 ccaacaccatttacctagtaacgacaggttaaactcccgcaacctcctgacacctaaccctctatcatccttactctggcaaactgaatcccagtttacc 25050432  T
Q  300 caagatattttgctaaa 316  Q
    ||||||||||| |||||    
T  25050431 caagatattttcctaaa 25050415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 353 - 443
Target Start/End: Complemental strand, 30827921 - 30827831
Alignment:
Q  353 gatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacga 443  Q
    |||| |||| |||||||||| ||||||  |||||||| ||||||||||||||| ||| |||||||| ||||| ||||| |||||| |||||    
T  30827921 gatagaagaaattatacctgcgggggccctgaagaaggaaagaaagtaaatcgaaagcgaagacatgacaaatttcaagaggatcagacga 30827831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 358 - 417
Target Start/End: Complemental strand, 53504565 - 53504506
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagaca 417  Q
    |||| ||||||||||| || |||||||| ||| |||||||||||| ||||||||||||||    
T  53504565 aagaaattatacctgtaggagctttgaaaaaggaaagaaagtaaaccggaagagaagaca 53504506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 429
Target Start/End: Complemental strand, 15205064 - 15205001
Alignment:
Q  366 atacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttca 429  Q
    |||||||  ||||||||||| ||| |||||||||||||| ||||||| ||||| ||| ||||||    
T  15205064 atacctgcaggggctttgaaaaaggaaagaaagtaaatcagaagagaggacatgacagacttca 15205001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 463
Target Start/End: Complemental strand, 21735122 - 21735013
Alignment:
Q  354 atataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcaccaaatg 453  Q
    ||||| || ||||||||||  ||||||||||| ||| |||||||||||| ||||||| | |||| |||| || ||| ||| | |  |||  |||||||||    
T  21735122 atataggaaattatacctgcaggggctttgaaaaaggaaagaaagtaaaccggaagacaggacaaaacagacatcagaagaaccaaacggccaccaaatg 21735023  T
Q  454 aaagatactt 463  Q
    ||||| ||||    
T  21735022 aaagaaactt 21735013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 28624371 - 28624448
Alignment:
Q  194 catcctccaacaccatttatttagtaatgacaagttaaactccctcaaccttctaacacctaacccttcatcctcctt 271  Q
    ||||||||||||||| ||   || |||||| || ||||| || | |||||||||||||||||||||| | ||||||||    
T  28624371 catcctccaacaccacttccctaataatgaaaaattaaattcacgcaaccttctaacacctaaccctccttcctcctt 28624448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 170 - 467
Target Start/End: Original strand, 22079171 - 22079470
Alignment:
Q  170 acacaatccgtctttataaactaacatcctccaacaccatttatttagtaatgacaagttaaactccctcaaccttctaacacctaacccttcatcctcc 269  Q
    |||||| || ||||||| ||| |||||||||||||||||||||  |||||| |||||||| |||||||| | |||  | |||||||||||||||||||||    
T  22079171 acacaacccttctttatcaaccaacatcctccaacaccatttacctagtaacgacaagttgaactcccttagcctcatgacacctaacccttcatcctcc 22079270  T
Q  270 ttactctgacaaacagaatcttaattcacccaagatattttgctaaaattctcacatccccccnnnnnnn-tattttaa-----gttttgatataagaga 363  Q
    |||||  || ||| ||  ||  |||||||| || ||||||| ||||||| | |||||| ||||        | || |||     | ||||||| ||||||    
T  22079271 ttacttcgaaaaagag--tcccaattcacctaaaatattttcctaaaatccccacatctccccaaaataaatcttataaaaatagatttgatagaagaga 22079368  T
Q  364 ttatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcaccaaatgaaagatactt 463  Q
    ||| |  ||||||||| ||||||||  ||| |||||||| ||| ||||||||||| ||| ||||||  |||||| ||||| || | |||||||||| |||    
T  22079369 ttaca--tgtgggggccttgaagaatgaaataaagtaaaccgggagagaagacatgacagacttcagcaggatcagacgaccatcgaatgaaagattctt 22079466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 353 - 473
Target Start/End: Complemental strand, 38430466 - 38430346
Alignment:
Q  353 gatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcaccaaat 452  Q
    |||| |||| ||||||||||||||||| ||||||||| |||||||||||| ||||| ||| ||||  ||| | || | ||| |||  |||| |||||||     
T  38430466 gatagaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggaacagaggacaagacagatttaagaagaatcaaacgaccaccaaac 38430367  T
Q  453 gaaagatacttgcttttccaa 473  Q
    |||||| | ||||||||||||    
T  38430366 gaaagaaatttgcttttccaa 38430346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 358 - 412
Target Start/End: Complemental strand, 12463726 - 12463672
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagaga 412  Q
    |||| |||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  12463726 aagaaattatacctgcgggggccttgaagaaggaaagaaagtaaatcggaagaga 12463672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 7288149 - 7288220
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttca 429  Q
    |||| |||||||||||||| || ||||||||| |||||||||||| | ||||||| ||||| ||||| ||||    
T  7288149 aagaaattatacctgtgggtgccttgaagaaggaaagaaagtaaaccagaagagacgacatgacaaatttca 7288220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 20367904 - 20367970
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaa 424  Q
    |||| |||||||||| | |||| ||||||||| ||||||||||||  |||||||| |||||||||||    
T  20367904 aagaaattatacctgcgagggccttgaagaaggaaagaaagtaaactggaagagacgacataacaaa 20367970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 8751187 - 8751130
Alignment:
Q  360 gagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagaca 417  Q
    |||||||||||||| || || ||||||||| |||||||||||| ||||||||| ||||    
T  8751187 gagattatacctgtaggcgccttgaagaaggaaagaaagtaaaccggaagagaggaca 8751130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 458
Target Start/End: Original strand, 9601550 - 9601650
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcgg-aagagaagacataacaaacttcaaaaggatcggacgatcaccaaatgaaa 456  Q
    |||| ||||||||||| ||||| ||||||||| |||||||||||| ||| |||| ||||||  ||| |||||| ||| ||| ||||| || |||||||||    
T  9601550 aagaaattatacctgtaggggccttgaagaaggaaagaaagtaaaccggcaaga-aagacaggacagacttcagaagaatcagacgaccatcaaatgaaa 9601648  T
Q  457 ga 458  Q
    ||    
T  9601649 ga 9601650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 458
Target Start/End: Original strand, 9829121 - 9829221
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcgg-aagagaagacataacaaacttcaaaaggatcggacgatcaccaaatgaaa 456  Q
    |||| ||||||||||| ||||| ||||||||| |||||||||||| ||| |||| ||||||  ||| |||||| ||| ||| ||||| || |||||||||    
T  9829121 aagaaattatacctgtaggggccttgaagaaggaaagaaagtaaaccggcaaga-aagacaggacagacttcagaagaatcagacgaccatcaaatgaaa 9829219  T
Q  457 ga 458  Q
    ||    
T  9829220 ga 9829221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 4959826 - 4959865
Alignment:
Q  197 cctccaacaccatttatttagtaatgacaagttaaactcc 236  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  4959826 cctccaacaccatttatcaagtaatgacaagttaaactcc 4959865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 430
Target Start/End: Original strand, 3942860 - 3942925
Alignment:
Q  365 tatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaa 430  Q
    ||||| |||||| || ||||| ||| |||||||||||| ||||||||||||||  ||||| |||||    
T  3942860 tatacatgtgggagccttgaaaaaggaaagaaagtaaaccggaagagaagacaggacaaatttcaa 3942925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 332
Target Start/End: Complemental strand, 16698947 - 16698812
Alignment:
Q  197 cctccaacaccatttatttagtaatgacaagttaaactccctcaaccttctaacacctaacccttcatcctccttactctgacaaacagaatcttaattc 296  Q
    |||||| ||| |||||  ||||||||| || ||||| ||||| ||||| || || ||||||||  ||||||| ||||| ||||||||||||||  |||||    
T  16698947 cctccagcacgatttacctagtaatgataaattaaattcccttaacctcctgacgcctaacccaccatcctctttactttgacaaacagaatcccaattc 16698848  T
Q  297 acccaagatattttgctaaaattctcacatcccccc 332  Q
    |||||||| ||||| |||  || |||||| ||||||    
T  16698847 acccaagagattttcctatgatcctcacaacccccc 16698812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 22196356 - 22196285
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttca 429  Q
    |||| |||||||||||||| || ||||||||| |||||||||||| ||||||||| ||||| ||||| ||||    
T  22196356 aagaaattatacctgtgggtgccttgaagaaggaaagaaagtaaaccggaagagacgacatgacaaatttca 22196285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 358 - 473
Target Start/End: Complemental strand, 51072054 - 51071939
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcaccaaatgaaag 457  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||| ||| ||||| | ||  ||| | || ||||||||| | ||| ||||||| |||||    
T  51072054 aagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggtagagatgtcaggacagatttgaaaaggatcaggcgaccaccaaacgaaag 51071955  T
Q  458 atacttgcttttccaa 473  Q
    | | |||| |||||||    
T  51071954 agatttgcctttccaa 51071939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 358 - 501
Target Start/End: Complemental strand, 16698780 - 16698637
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcaccaaatgaaag 457  Q
    |||||||||||| || ||| ||  |||||||| |||||||||| | | ||||||||||||| ||| | |||||||||||  ||||  |||| |  |||||    
T  16698780 aagagattatacttgagggagccatgaagaaggaaagaaagtagaccagaagagaagacatgacagatttcaaaaggattagacggccacctagggaaag 16698681  T
Q  458 atacttgcttttccaacttaacaacctcaaattaatgcgatcaa 501  Q
    || ||| |||||||||||   || | |||| |||||||||||||    
T  16698680 atgcttccttttccaactagtcatcttcaatttaatgcgatcaa 16698637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 10358441 - 10358396
Alignment:
Q  357 taagagattatacctgtgggggctttgaagaagaaaagaaagtaaa 402  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  10358441 taagaaattatacctgtgggggccttgaagaaggaaagaaagtaaa 10358396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 412
Target Start/End: Original strand, 18871038 - 18871087
Alignment:
Q  363 attatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagaga 412  Q
    ||||||| |||||| || ||||||||| ||||||||||||||||||||||    
T  18871038 attatacttgtgggagccttgaagaaggaaagaaagtaaatcggaagaga 18871087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 46610680 - 46610740
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacat 418  Q
    |||| ||||||||||| ||||||||||| ||| |||||||||||| |||||  ||||||||    
T  46610680 aagaaattatacctgtaggggctttgaaaaaggaaagaaagtaaaccggaatggaagacat 46610740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 412
Target Start/End: Complemental strand, 5320315 - 5320261
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagaga 412  Q
    |||| ||||||| || ||| || ||||||||| ||||||||||||||||||||||    
T  5320315 aagaaattatacatgcgggagccttgaagaaggaaagaaagtaaatcggaagaga 5320261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 353 - 472
Target Start/End: Complemental strand, 15174628 - 15174509
Alignment:
Q  353 gatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcaccaaat 452  Q
    |||| |||| ||||||||||||||||| ||||||||| |||||||||||| ||| ||| | ||||| ||||| |||| |||  || ||||| |||||||     
T  15174628 gatagaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggtagacatgacatgacaaatttcagaagattcagacgaccaccaaac 15174529  T
Q  453 gaaagatacttgcttttcca 472  Q
    || ||| | |||||||||||    
T  15174528 gagagaaatttgcttttcca 15174509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 50817296 - 50817224
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaa 430  Q
    |||| |||||||||| |||||| ||||||||| |||||||||||| |||||| |||||||| ||||| |||||    
T  50817296 aagaaattatacctgcgggggccttgaagaaggaaagaaagtaaaccggaagcgaagacatgacaaatttcaa 50817224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 358 - 408
Target Start/End: Original strand, 43914155 - 43914205
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaa 408  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||| |||||    
T  43914155 aagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggaa 43914205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 409
Target Start/End: Complemental strand, 41806066 - 41806017
Alignment:
Q  360 gagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaag 409  Q
    ||||||||||||| |||||||||||| ||| |||||||||||| ||||||    
T  41806066 gagattatacctgcgggggctttgaaaaaggaaagaaagtaaaccggaag 41806017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 417
Target Start/End: Complemental strand, 14976029 - 14975970
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagaca 417  Q
    ||||||||||||||| |||||| ||||||||| |||||||| ||| ||| || |||||||    
T  14976029 aagagattatacctgcgggggccttgaagaaggaaagaaaggaaaccgggagcgaagaca 14975970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 363 - 433
Target Start/End: Original strand, 751626 - 751696
Alignment:
Q  363 attatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaag 433  Q
    |||||||||| |||| ||||||| ||| |||||||||||| || ||  |||||||||||| | ||||||||    
T  751626 attatacctgcggggactttgaaaaaggaaagaaagtaaaccgaaatggaagacataacagatttcaaaag 751696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 363 - 473
Target Start/End: Complemental strand, 617 - 507
Alignment:
Q  363 attatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcaccaaatgaaagatact 462  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||| ||||| ||||  ||| | ||||  |||||| | ||| ||||||| |||||| | |    
T  617 attatacctgtgggggccttgaagaaggaaagaaagtaaaccggtagagatgacaggacagatttcaggaggatcaggcgaccaccaaacgaaagagatt 518  T
Q  463 tgcttttccaa 473  Q
    |||||||||||    
T  517 tgcttttccaa 507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 33036329 - 33036388
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagaca 417  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||| ||||    
T  33036329 aagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggaagagatgaca 33036388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 5664009 - 5664080
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttca 429  Q
    |||| ||||||||||  ||||||||||| ||| |||||||||||| ||||||||| ||||| ||| ||||||    
T  5664009 aagaaattatacctgcaggggctttgaaaaaggaaagaaagtaaaccggaagagaggacatgacagacttca 5664080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 358 - 417
Target Start/End: Complemental strand, 26245889 - 26245830
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagaca 417  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||| ||| || |||||||    
T  26245889 aagagattatacctgcgggggccttgaagaaggaaagaaagtaaaccgggagcgaagaca 26245830  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 45717955 - 45718014
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagaca 417  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||| ||| || |||||||    
T  45717955 aagagattatacctgcgggggccttgaagaaggaaagaaagtaaaccgggagcgaagaca 45718014  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 363 - 429
Target Start/End: Original strand, 45469530 - 45469596
Alignment:
Q  363 attatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttca 429  Q
    ||||||||||| || || ||||||||| |||||||||||| ||||||||| ||||| | ||||||||    
T  45469530 attatacctgtaggagccttgaagaaggaaagaaagtaaaccggaagagaggacatgaaaaacttca 45469596  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 363 - 429
Target Start/End: Original strand, 45702555 - 45702621
Alignment:
Q  363 attatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttca 429  Q
    ||||||||||| || || ||||||||| |||||||||||| ||||||||| ||||| ||| ||||||    
T  45702555 attatacctgtaggagccttgaagaaggaaagaaagtaaaccggaagagaggacatgacagacttca 45702621  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 2467689 - 2467640
Alignment:
Q  222 gacaagttaaactccctcaaccttctaacacctaacccttcatcctcctt 271  Q
    ||||| |||||||| |||||||||||||| || |||||||||||||||||    
T  2467689 gacaaattaaactctctcaaccttctaacccccaacccttcatcctcctt 2467640  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 15171446 - 15171511
Alignment:
Q  353 gatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacat 418  Q
    |||| |||| ||||||| ||||||||| |||||||| ||||||||||||| ||||||||| |||||    
T  15171446 gatagaagaaattatacatgtgggggccttgaagaacaaaagaaagtaaaccggaagagatgacat 15171511  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 15180218 - 15180283
Alignment:
Q  353 gatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacat 418  Q
    |||| |||| ||||||| ||||||||| |||||||| ||||||||||||| ||||||||| |||||    
T  15180218 gatagaagaaattatacatgtgggggccttgaagaacaaaagaaagtaaaccggaagagatgacat 15180283  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 325
Target Start/End: Original strand, 10747858 - 10747990
Alignment:
Q  192 aacatcctccaacaccatttatttagtaatgacaagttaaactccctcaaccttctaacacctaacccttcatcctccttactctgacaaacagaatctt 291  Q
    |||||||||||||||||||||| || |||||| || ||||| || |  |||||  | ||||||||| |  | |||||||||||| |||| |||| |||      
T  10747858 aacatcctccaacaccatttatataataatgataaattaaattctcgtaacctgttgacacctaactcaccttcctccttactccgacacacag-atccc 10747956  T
Q  292 aattcacccaagatattttgctaaaattctcaca 325  Q
    |||||| |||||| ||||| ||||||| ||||||    
T  10747957 aattcaaccaagagattttcctaaaatcctcaca 10747990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 15471967 - 15471902
Alignment:
Q  353 gatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacat 418  Q
    |||| |||| ||||||| ||||||||| |||||||| ||||||||||||| |||||| || |||||    
T  15471967 gatagaagaaattatacatgtgggggccttgaagaacaaaagaaagtaaaccggaagggatgacat 15471902  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 417
Target Start/End: Complemental strand, 12334962 - 12334903
Alignment:
Q  358 aagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagaca 417  Q
    |||| ||||||||| |||| || ||||||||| |||||||||||| ||||||||| ||||    
T  12334962 aagaaattatacctatgggtgccttgaagaaggaaagaaagtaaaccggaagagacgaca 12334903  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 16478959 - 16479018
Alignment:
Q  353 gatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagaga 412  Q
    |||| ||||||| |||||||| ||||| ||||||||| |||||||||||| ||| |||||    
T  16478959 gatagaagagatgatacctgtaggggccttgaagaaggaaagaaagtaaaccgggagaga 16479018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 21606393 - 21606447
Alignment:
Q  363 attatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagaca 417  Q
    ||||||||||| ||||||||||| ||| |||||||||||| | ||||||| ||||    
T  21606393 attatacctgtcggggctttgaaaaaggaaagaaagtaaacctgaagagaggaca 21606447  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 3298056 - 3298105
Alignment:
Q  380 tttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttca 429  Q
    |||||| ||| |||||||||||| ||||||||| ||||| ||||||||||    
T  3298056 tttgaaaaaggaaagaaagtaaaccggaagagaggacatgacaaacttca 3298105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 449
Target Start/End: Complemental strand, 18488435 - 18488346
Alignment:
Q  360 gagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttcaaaaggatcggacgatcacca 449  Q
    ||||| |||||||| ||||| ||||||||| |||||||||||| ||| ||||| || |  ||| |||||| ||| ||| ||||| |||||    
T  18488435 gagatgatacctgtaggggccttgaagaaggaaagaaagtaaaccgggagagaggataggacagacttcagaagaatcagacgaccacca 18488346  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 34702379 - 34702338
Alignment:
Q  197 cctccaacaccatttatttagtaatgacaagttaaactccct 238  Q
    ||||||||||||||| | |||||| |||||||||||||||||    
T  34702379 cctccaacaccatttgtgtagtaaagacaagttaaactccct 34702338  T

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Target: scaffold0155 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 350 - 429
Target Start/End: Original strand, 32960 - 33039
Alignment:
Q  350 tttgatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacataacaaacttca 429  Q
    ||||||| | || ||||||| ||| || || ||||||||| |||||||||||||| ||||||| |||| |||||||||||    
T  32960 tttgatagaggaaattatacatgtaggtgccttgaagaaggaaagaaagtaaatcagaagagaggacagaacaaacttca 33039  T

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Target: scaffold0533 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 739 - 804
Alignment:
Q  353 gatataagagattatacctgtgggggctttgaagaagaaaagaaagtaaatcggaagagaagacat 418  Q
    |||| |||| |||| || ||||||| | |||||||||||||||||||||| ||||||||| |||||    
T  739 gatagaagaaattaaacttgtggggaccttgaagaagaaaagaaagtaaaccggaagagatgacat 804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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