View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18020_high_11 (Length: 335)
Name: NF18020_high_11
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 38991027 - 38991331
Alignment:
| Q |
18 |
ggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggtggggta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38991027 |
ggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggtggggta |
38991126 |
T |
|
| Q |
118 |
tgggataacgagttgtgaatggtgatgtcagagacaataccagaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggact |
217 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38991127 |
tgagataacgagctgtgaatggtgatgtcagagacaataccaaaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggact |
38991226 |
T |
|
| Q |
218 |
ccaaaacatcatacccagcagggatttcaataaatatttgtttcattaatgtttgaggctctaccataaccaccgcaggtggcttgggcttgtttttgga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38991227 |
ccaaaacatcatacccagcagggatttcaataaatatttgtttcattaatgtttgaggctctaccataaccaccgcaggtgtcttgggcttgtttttgga |
38991326 |
T |
|
| Q |
318 |
gccct |
322 |
Q |
| |
|
||||| |
|
|
| T |
38991327 |
gccct |
38991331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 322
Target Start/End: Complemental strand, 38954744 - 38954444
Alignment:
| Q |
22 |
atgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggtggggtatggg |
121 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||| |||||| || |||||||||||||| |||| |||| ||| | |
|
|
| T |
38954744 |
atgaattcagaaggaacagtatcagaattgggattgatgtaagtgccagagagagacatcattttgatgggtccttcaatagttagtgcaggggaatgag |
38954645 |
T |
|
| Q |
122 |
ataacgagttgtgaatggtgatgtcagagacaataccagaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggactccaa |
221 |
Q |
| |
|
|| |||||| | ||||| || | |||||||| ||| |||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38954644 |
atgtcgagttacggatggtaatattagagacaagaccggaacctctcattactgagatatcagcttgatgacgccaagccatcttgatgatggactccac |
38954545 |
T |
|
| Q |
222 |
aacatcatacccagcagggatttcaataaatatttgtttcattaatgtttgaggctctaccataaccaccgcaggtggcttgggcttgtttttggagccc |
321 |
Q |
| |
|
||||||| | ||||| | ||||| ||||| ||||||||||| || ||| ||||||||| | | |||| | || || ||||| || |||||||||||| |
|
|
| T |
38954544 |
aacatcacatccagctgatatttcgataaaaatttgtttcataaaactttcaggctctacggtgatcaccactgggggtttgggtttatttttggagccc |
38954445 |
T |
|
| Q |
322 |
t |
322 |
Q |
| |
|
| |
|
|
| T |
38954444 |
t |
38954444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 299
Target Start/End: Original strand, 18528036 - 18528173
Alignment:
| Q |
161 |
aacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggactccaaaacatcatacccagcagggatttcaataaatatttgttt |
260 |
Q |
| |
|
||||||||||||||| |||||| |||| || ||||||| ||| |||||||||||||||| |||||||||| || |||||||| |||||| |||||||| |
|
|
| T |
18528036 |
aacctctcagcactgagatgtctgcttgataacgccaattcattttgatgatggactccacaacatcatactcaatagggattttaataaaaatttgttt |
18528135 |
T |
|
| Q |
261 |
cattaatgtttgaggctctaccataaccaccgcaggtgg |
299 |
Q |
| |
|
|| ||| |||| |||||||||||||| |||| ||||||| |
|
|
| T |
18528136 |
ca-taaggtttcaggctctaccataatcaccacaggtgg |
18528173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 322
Target Start/End: Complemental strand, 18527925 - 18527763
Alignment:
| Q |
160 |
gaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggactccaaaacatcatacccagcagggatttcaataaatatttgtt |
259 |
Q |
| |
|
|||||||||| ||| | |||||| || ||| |||||||||||| ||||||||| |||| || |||||| ||||| |||||||||||| ||| ||| |
|
|
| T |
18527925 |
gaacctctcatcacagatatgtcatctagatgtcgccaagccatcctgatgatggtttccataaaatcatatatagcagagatttcaataaaaattagtt |
18527826 |
T |
|
| Q |
260 |
tcattaatgtttgaggctctaccataaccaccgcaggtggcttgggcttgtttttggagccct |
322 |
Q |
| |
|
|||| || |||| || |||||||| | |||| || ||| ||||| ||||| ||| |||||| |
|
|
| T |
18527825 |
tcataaaagttttgggatctaccatgatcaccacatatggtttgggtttgttcttgtagccct |
18527763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University