View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_high_12 (Length: 303)
Name: NF18020_high_12
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 31212613 - 31212720
Alignment:
| Q |
61 |
gcatatgtcaaaagtagttagttttgaatctaagctaattatttt-aaaaatttgtttgtggtaagtccattctagatttgttttctttcgtgctccgtc |
159 |
Q |
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| T |
31212613 |
gcatatgtcaaaagtagttagttttgaatctaagctaattatttttaaaaatttgtttgtggtaagtccattcaagatttgttttctttcgtgctccgtc |
31212712 |
T |
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| Q |
160 |
acaacaca |
167 |
Q |
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|||||||| |
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| T |
31212713 |
acaacaca |
31212720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 164 - 287
Target Start/End: Original strand, 31212764 - 31212893
Alignment:
| Q |
164 |
cacaattattattttgaaagatacctacca------caattattaaaacgtgttggatttaatnnnnnnnntcaaatatcttctaattctagttttatgc |
257 |
Q |
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|||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
31212764 |
cacaattatttttttgaaagatacctaccaggatcacaattaataaaacgtgttggatttaataaaaaaaatcaaatatcttctgattctagttttatgc |
31212863 |
T |
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| Q |
258 |
tgtcctcttacagagggagacaaaaatcat |
287 |
Q |
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| T |
31212864 |
tgtcctcttacagagggagacaaaaatcat |
31212893 |
T |
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