View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_high_14 (Length: 280)
Name: NF18020_high_14
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 41085944 - 41085688
Alignment:
| Q |
18 |
gttaataataatggactgtcttcttcttccaacaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgcagtggtccagcctc |
117 |
Q |
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| T |
41085944 |
gttaataataatggactgtcttcttcttccaacaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgcagtggtccagcctc |
41085845 |
T |
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| Q |
118 |
ataaaccttttgatgaggttcagaattatggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggtttctaggtgttgatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41085844 |
ataaaccttttgatgaggttcagaattatggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggtttctaggtgttgatga |
41085745 |
T |
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| Q |
218 |
agatgtggtacaagatgttctatggcctgattctaatgctatgaatatgatgatgtc |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41085744 |
agatgtggtacaagatgttctatggcctgattctaatgctatgaatatgatgatgtc |
41085688 |
T |
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