View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_high_2 (Length: 627)
Name: NF18020_high_2
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 615
Target Start/End: Original strand, 43205490 - 43206087
Alignment:
| Q |
18 |
gataatgatctgttgtaattcattattaattagtcagaaatcaaattcaaaagatgtaacggtttgtcttattgggaaggttgtttccgatttttcacgt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43205490 |
gataatgatctgttgtaattcattattaattagtcagaaatcaaattgaaaagatctaacggtttgtcttattgggaaggttgtttccgatttttcacgt |
43205589 |
T |
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| Q |
118 |
tggggatgtgctatgaatatacatgaacacataccgctcacgattcaaaactcgccaaccattttcaagtctggaaacacatgatggggtggaaggatgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43205590 |
tggggatgtgctatgaatatacatgaacacataccgctcacaattcaaaacttgccaaccattttcaagtctggaaacacatgatggggtggaagggtgt |
43205689 |
T |
|
| Q |
218 |
gattttaaaaaggttaaaattagta---ttttttatggtttgtaaggg--tataattgttggggtgtggggtaaaatgttcgtaattttgcatcctttaa |
312 |
Q |
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| T |
43205690 |
gattttaaaaaggttaaaattagtatttttttttatggtttgtaagggtatataattgttggggtgtggggtaaaatgttcgtaattttgcatcctttaa |
43205789 |
T |
|
| Q |
313 |
ccaagtggtccgggttcaatccctttctcttgtggaagaaaatttgattgaaggccttatgtgtccaacagattatactgatcgatgaaaattattcaat |
412 |
Q |
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| T |
43205790 |
ccaagtggtctgggttcaatccctttctcttgtggaagaaaatttgattgaaggccttatgtgtccaacagattattct----gatgaaaattattcaat |
43205885 |
T |
|
| Q |
413 |
tgtgagcagagaactcacattatgcattaaagaggttttcggatcgagattaatcgcctttaaacaacagtgtcagtcaaaagnnnnnnnattattacaa |
512 |
Q |
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| T |
43205886 |
tgtgagcggagaactcacattatgcattaaagaggtttttcgatggagattaatcgcctttaaacaacgatgtcagtcaaaagtttttttattattacaa |
43205985 |
T |
|
| Q |
513 |
tttttaagacaaaaataatgatttactaattacatatttcattcaacnnnnnnnctttacatacggcctcatgttatggaaaattttctcttttaacccc |
612 |
Q |
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| T |
43205986 |
tttttaagacaaaaataatgatttactaattacatatttcattcaac-ttttttctttacatactgcctcatgttatggaaaatttgctcttttaacccc |
43206084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 176 - 293
Target Start/End: Original strand, 2092780 - 2092903
Alignment:
| Q |
176 |
ccattttcaagtctggaaacacatgatggggtggaaggatgtgattttaaaaaggttaaaattagtattttttatggttt------gtaagggtataatt |
269 |
Q |
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| T |
2092780 |
ccattttcaagtctggaaacacatgatggggtggaagggtgtgattttgaaaaggttaaaataggtatttttgatggtttgtaggggtaagggtataatt |
2092879 |
T |
|
| Q |
270 |
gttggggtgtggggtaaaatgttc |
293 |
Q |
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| T |
2092880 |
gtcggggtgtgaggtaaaatgttc |
2092903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 43205354 - 43205287
Alignment:
| Q |
173 |
caaccattttcaagtctggaaacacatgat-ggggtggaaggatgtgatttt-aaaaaggttaaaatt |
238 |
Q |
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| T |
43205354 |
caaccattttcaagtctggaaacacatgctgggggtggaagggtgtgattttgaaaaaggttataatt |
43205287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 44303267 - 44303319
Alignment:
| Q |
209 |
gaaggatgtgattttaaaaaggttaaaattagtattttttatggtttgtaagg |
261 |
Q |
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| T |
44303267 |
gaagggtgcgattttagaaaggttaaaattggtatttatgatggtttgtaagg |
44303319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 36806258 - 36806134
Alignment:
| Q |
175 |
accattttcaagtctggaaacacat---gatggggtggaaggatgtgattttaaaaaggttaaaattagtattttttatggtttgtaagg-----gtata |
266 |
Q |
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||||||||||| ||| |||||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||| || |||||| | | ||| |
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| T |
36806258 |
accattttcaattctagaaacacaacaagatggggtggaagggtgtgaatttgaaaaggttaaaattggtatttttaattatttgtagtgtggaaggata |
36806159 |
T |
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| Q |
267 |
attgttggggtgtggggtaaaatgt |
291 |
Q |
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| T |
36806158 |
attgttggagtgtggggtaaaatgt |
36806134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 50941457 - 50941525
Alignment:
| Q |
219 |
attttaaaaaggttaaaattagtattttttatggtttgtaagggtataattgttggggtgtggggtaaa |
287 |
Q |
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| T |
50941457 |
atttaaaaaaggttaaaattgatatttttgatgatttgtagggatataattgttgaggtgtggagtaaa |
50941525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 258
Target Start/End: Original strand, 41362573 - 41362612
Alignment:
| Q |
219 |
attttaaaaaggttaaaattagtattttttatggtttgta |
258 |
Q |
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| T |
41362573 |
attttaaaatggttaaaattagtatttttgatggtttgta |
41362612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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