View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_high_25 (Length: 204)
Name: NF18020_high_25
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 36360288 - 36360116
Alignment:
| Q |
17 |
aatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagggcaatcagttttagtggcacctcaagattataattatctactcaaaccaatca |
116 |
Q |
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| T |
36360288 |
aatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagggcaatcagttttagtggcacctcaagattataattatctactcaaaccaatca |
36360189 |
T |
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| Q |
117 |
gattctctggtccttgcaaatctaacatatcagttcaggtcagctacattatatattaagctagtgattaatt |
189 |
Q |
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| T |
36360188 |
gattctctggtccttgcaaatctaacatatcagttcaggttagctacattatatattaagctagtgattaatt |
36360116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 36349030 - 36348872
Alignment:
| Q |
17 |
aatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagg------gcaatcagttttagtggcacctcaagattataattatctactcaaac |
110 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||| ||||| | || ||||||| || |||||||||||| ||| |||||||||||||| |
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| T |
36349030 |
aatattcaggcattcgagaaggcttgggaagcagtatgttcttcaggaggaggggaagcagtttttgttgcacctcaagataatatttatctactcaaac |
36348931 |
T |
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| Q |
111 |
caatcagattctctggtccttgcaaatctaacatatcagttcaggtcagctacattata |
169 |
Q |
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| T |
36348930 |
caatcagattctctggtccttgcaaatctaagatatcattccaggtcagttacattata |
36348872 |
T |
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