View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_high_3 (Length: 578)
Name: NF18020_high_3
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 14 - 562
Target Start/End: Original strand, 21055881 - 21056429
Alignment:
| Q |
14 |
atctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaat |
113 |
Q |
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| T |
21055881 |
atctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaat |
21055980 |
T |
|
| Q |
114 |
gatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctatttt |
213 |
Q |
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| T |
21055981 |
gatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtgctccagtgatgcattgtatacctctatttt |
21056080 |
T |
|
| Q |
214 |
tggagttgcggataagtttacttactgcaagcagcattggagtgtttgagtttaacttgacaatggcatgcttatagtaaagtagattagatatagaaaa |
313 |
Q |
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| T |
21056081 |
tggagttgcggataagtttacttactggaagttgcattggagtgtttgagtttaacttgacaatggcatgcttattgtaaagtagattagatatagaaaa |
21056180 |
T |
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| Q |
314 |
agttgatgtccggctacattgagaaggtgttgctcattgtgtctggaaactttcttatcattgcatgtatttgattcgtttgggaaattactatgatagg |
413 |
Q |
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| T |
21056181 |
agttgatgtccggctacattgagaaggtgttgctcattgtgtctgcaaactttcttatcattgcatgtatttgattcgtttgggaaattactatgatagg |
21056280 |
T |
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| Q |
414 |
tatttatgtgctattatactg-acaaaaattgatnnnnnnnnntatataataatgaaatagaagtcaaattctcatgtgttgcacaaggattgtgcacta |
512 |
Q |
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| T |
21056281 |
tatttatgtgctattatactgcacaaaaattgat-aaaaaaaatatataataatgaaatagaagtcaaattctcatgtggttcacaaggattgtgcacta |
21056379 |
T |
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| Q |
513 |
ttgatttggtgaaattatctggagaattctgctttgactataataaaatt |
562 |
Q |
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| T |
21056380 |
ttgatttggtgaaattatctcgagaattctgctttgactataataaaatt |
21056429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 13 - 430
Target Start/End: Complemental strand, 26366064 - 26365654
Alignment:
| Q |
13 |
tatctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaa |
112 |
Q |
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| T |
26366064 |
tatctggtttagtccttgctgctttatgtgtctgattttttatgctggcacaatatgatctttactggcatttaccccatttctggtttatctatttgaa |
26365965 |
T |
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| Q |
113 |
tgatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctattt |
212 |
Q |
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| T |
26365964 |
tgatgttatttagttgtgtaataatttgttcattgataagtcgatgctttggattatgaatcaacaatgcagt--agtgatgcattgtatacctct-ttt |
26365868 |
T |
|
| Q |
213 |
ttggagttgcggataagtttacttactgcaagcagcattggagtgtttgagtttaacttgacaatggcatgcttatagtaaagtagattagatatagaaa |
312 |
Q |
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| T |
26365867 |
ttgg-gttgttgacaagtttacttattggaagctgca---gagtgtttgggtttaatttgaaaatggcatgcctataggaaatttgattgaatatagaaa |
26365772 |
T |
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| Q |
313 |
aagttgatgtccggctacattgagaaggtgttgctcattgtgtctggaaactttcttatcattgcatgtatttgattc-gtttgggaaattactatgata |
411 |
Q |
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| T |
26365771 |
aagttgatatccagctagattgagaaggttttgctcattgtgtcagcaaacatgc-tagcattgcatgcatttgattctatttgggaaattaatatgata |
26365673 |
T |
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| Q |
412 |
ggtatttatgtgctattat |
430 |
Q |
| |
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| T |
26365672 |
tgcatctatgtgttattat |
26365654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 26363573 - 26363244
Alignment:
| Q |
16 |
ctggtttatttcttgctgctttatatatctaatttttt-atgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaatg |
114 |
Q |
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| T |
26363573 |
ctggtttagttcctgctgctttatgtgtctgatttttttatgctggcactatgcgatctttactggcatttaccccatttctggtttatctatttgaatg |
26363474 |
T |
|
| Q |
115 |
atattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctattttt |
214 |
Q |
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| T |
26363473 |
atattatttggttgtgtaataatttgttctttgataagtaacttctttggattgtgaaacaacaatgcagtagtgtgaagcattgcatatctct-tttgt |
26363375 |
T |
|
| Q |
215 |
ggagttgcggataagtttactta-ctgcaagcagcattggagtgtttgagtttaacttgacaatggcatgcttatagtaaagtagattagatatagaaaa |
313 |
Q |
| |
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| T |
26363374 |
gg-gttgttgacaagtttacttatgggaaagctgca---gagtgtctgtgtttaacttgagaatggcatgcttataggaaatttgatttaatattgaaaa |
26363279 |
T |
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| Q |
314 |
agttgatgtccggctacattgagaaggtgttgctc |
348 |
Q |
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||||||||||| ||||||||| |||||| |||||| |
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| T |
26363278 |
agttgatgtccagctacattgtgaaggttttgctc |
26363244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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